View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19996_high_8 (Length: 403)
Name: NF19996_high_8
Description: NF19996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19996_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 1250954 - 1250569
Alignment:
| Q |
1 |
tgaaaatcaactcaatttctgtttcttttaattgcttaggttccaattcttggtctttttcactcttttggcaattagtaggggaggaatgctatatggt |
100 |
Q |
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| T |
1250954 |
tgaaaatcaactcaatttctgtttcttttaattgcttaggttccaattcttggtctttttcactcttttggcaattagtaggggaggaatgctatatggt |
1250855 |
T |
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| Q |
101 |
acgaagtgtcacgaatttagaatcatcatctcagggtggatgaagattcatagccttttgtataaataacatttgtactatcaatcattttaattgttta |
200 |
Q |
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| T |
1250854 |
acaaagtgtcacgaatttagaatcatcatctcagggtggatgaagattcatagccttttgtataaataacatttgtactatcaatcattttaattgttta |
1250755 |
T |
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| Q |
201 |
atattaattagtagggttactcactacatcaaaaaatacttttagccacaactattatacatttgagcaaatatataaatagatattgaagtaattgtga |
300 |
Q |
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| T |
1250754 |
atattaattagtagggttactcactacatcaaaaaatacttttagccacaactattatacatttgagcaaatatataaatagatattgaaataattgtga |
1250655 |
T |
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| Q |
301 |
atttaagtatcattgcatataataaacacatcaaacttcatatttaatattaaaagcatcaatgagtgattgggcagcgtcgaatt |
386 |
Q |
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| T |
1250654 |
atttaagtatcattgcatataataaacacatcaaacttcatatttaatattaaaagcatcaatgagcgattgggcagcgtcgaatt |
1250569 |
T |
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