View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19996_low_10 (Length: 364)

Name: NF19996_low_10
Description: NF19996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19996_low_10
NF19996_low_10
[»] chr6 (11 HSPs)
chr6 (10-330)||(33265897-33266241)
chr6 (10-330)||(33275041-33275385)
chr6 (86-325)||(33361522-33361780)
chr6 (22-76)||(33361920-33361974)
chr6 (203-256)||(33277707-33277760)
chr6 (273-328)||(33060608-33060662)
chr6 (205-260)||(33060717-33060772)
chr6 (272-330)||(33277562-33277619)
chr6 (86-144)||(33361824-33361882)
chr6 (272-330)||(33403653-33403710)
chr6 (41-71)||(33361797-33361827)
[»] chr2 (2 HSPs)
chr2 (263-330)||(17437688-17437753)
chr2 (219-251)||(17437626-17437658)


Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 10 - 330
Target Start/End: Complemental strand, 33266241 - 33265897
Alignment:
Q  10 ataattctatataaaaggtaatataatcttaatctttggaggataaatttatagatttattcttaagnnnnnnnnn--ataatgtgtctggtcgagacaa 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||    
T  33266241 ataattctatataaaaggtaatataatcttaatctttggaggataaatttatagatttattcttaagtttttttttttataatgtgtctggtcgagacaa 33266142  T
Q  108 attttcgaaaacaattttaaaaggagtggttatatctaattaactttagnnnnnnnnnnnnnncggaaagtgattttaaaagtgactgaaacaccatata 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||    
T  33266141 attttcgaaaacaattttaaaaggagtggttatatctaattaactttagttttttttctttttcggaaagtgattttaaaagtgactgaaacaccatata 33266042  T
Q  208 tggcccat---ggagaagctgtcaagaagcaaccaagctccattattgaaaagaagc-------------------aaattattgtaaagaaagtgccac 285  Q
    ||   |||   ||||||||||||||||||||||||||||||||||||||||||||||                   ||||||||||||||||||||||||    
T  33266041 tgcttcattatggagaagctgtcaagaagcaaccaagctccattattgaaaagaagctccattattgaaaagaagcaaattattgtaaagaaagtgccac 33265942  T
Q  286 aaaatcaaacgcttaaagttcattgttcataatattaatatatgc 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  33265941 aaaatcaaacgcttaaagttcattgttcataatattaatatatgc 33265897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 10 - 330
Target Start/End: Complemental strand, 33275385 - 33275041
Alignment:
Q  10 ataattctatataaaaggtaatataatcttaatctttggaggataaatttatagatttattcttaagnnnnnnnnn--ataatgtgtctggtcgagacaa 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||    
T  33275385 ataattctatataaaaggtaatataatcttaatctttggaggataaatttatagatttattcttaagtttttttttttataatgtgtctggtcgagacaa 33275286  T
Q  108 attttcgaaaacaattttaaaaggagtggttatatctaattaactttagnnnnnnnnnnnnnncggaaagtgattttaaaagtgactgaaacaccatata 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||||||    
T  33275285 attttcgaaaacaattttaaaaggagtggttatatctaattaactttagttttttttctttttcggaaagtgattttaaaagtgactgaaacaccatata 33275186  T
Q  208 tggcccat---ggagaagctgtcaagaagcaaccaagctccattattgaaaagaagc-------------------aaattattgtaaagaaagtgccac 285  Q
    ||   |||   ||||||||||||||||||||||||||||||||||||||||||||||                   ||||||||||||||||||||||||    
T  33275185 tgcttcattatggagaagctgtcaagaagcaaccaagctccattattgaaaagaagctccattattgaaaagaagcaaattattgtaaagaaagtgccac 33275086  T
Q  286 aaaatcaaacgcttaaagttcattgttcataatattaatatatgc 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  33275085 aaaatcaaacgcttaaagttcattgttcataatattaatatatgc 33275041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 86 - 325
Target Start/End: Complemental strand, 33361780 - 33361522
Alignment:
Q  86 ataatgtgtctggtcgagacaaattttcgaaaacaattttaaaaggagtggttatatctaattaactttagnnnnnnnnnnnnnncggaaagtgatttta 185  Q
    ||||||| ||| || ||||||||  |||||||||||||||||||||| |||| |||||| ||||||||| |               ||||| ||||||||    
T  33361780 ataatgtttctagtggagacaaaaattcgaaaacaattttaaaaggattggtaatatcttattaacttttgtttttttagttttttggaaaatgatttta 33361681  T
Q  186 aaagtgactgaaacaccatatatggcccatggagaagctgtcaagaagcaaccaa-------------------gctccattattgaaaagaagcaaatt 266  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||                   ||||||||||||||||||||||||||    
T  33361680 aaagtgactaaaacaccatatatggcccatggagaagctgtcaagaagcaactaatctccattattgaatagaagctccattattgaaaagaagcaaatt 33361581  T
Q  267 attgtaaagaaagtgccacaaaatcaaacgcttaaagttcattgttcataatattaata 325  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  33361580 attgtaaagaaagtgccacgaaatcaaacgcttaaagttcattgttcataataataata 33361522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 76
Target Start/End: Complemental strand, 33361974 - 33361920
Alignment:
Q  22 aaaaggtaatataatcttaatctttggaggataaatttatagatttattcttaag 76  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33361974 aaaaggtaatataatcttaatctttggaggataaatttatagatttattcataag 33361920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 203 - 256
Target Start/End: Complemental strand, 33277760 - 33277707
Alignment:
Q  203 atatatggcccatggagaagctgtcaagaagcaaccaagctccattattgaaaa 256  Q
    ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  33277760 atatatggcccatggggaagctgtcaagaagcaaccaagcttcattattgaaaa 33277707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 273 - 328
Target Start/End: Complemental strand, 33060662 - 33060608
Alignment:
Q  273 aagaaagtgccacaaaatcaaacgcttaaagttcattgttcataatattaatatat 328  Q
    ||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||    
T  33060662 aagaaagtgccacgaaatcaa-cgcttgaagttcattgttcataatattaatatat 33060608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 260
Target Start/End: Complemental strand, 33060772 - 33060717
Alignment:
Q  205 atatggcccatggagaagctgtcaagaagcaaccaagctccattattgaaaagaag 260  Q
    ||||||||| | | |||||||| |||||||||||||||||||||||||||||||||    
T  33060772 atatggcccttagggaagctgtgaagaagcaaccaagctccattattgaaaagaag 33060717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 33277619 - 33277562
Alignment:
Q  272 aaagaaagtgccacaaaatcaaacgcttaaagttcattgttcataatattaatatatgc 330  Q
    |||||| ||| ||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  33277619 aaagaacgtgtcaccaaatcaa-cgcttaaagttcattgttcataatattaatatatgc 33277562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 33361882 - 33361824
Alignment:
Q  86 ataatgtgtctggtcgagacaaattttcgaaaacaattttaaaaggagtggttatatct 144  Q
    ||||||||||| || || |||||  ||||||||||||||||||||||||||||||||||    
T  33361882 ataatgtgtctagtggaaacaaaaattcgaaaacaattttaaaaggagtggttatatct 33361824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 272 - 330
Target Start/End: Complemental strand, 33403710 - 33403653
Alignment:
Q  272 aaagaaagtgccacaaaatcaaacgcttaaagttcattgttcataatattaatatatgc 330  Q
    |||||||||||||| |||| ||||| || ||||||||||||||||||||||||||||||    
T  33403710 aaagaaagtgccacgaaat-aaacgtttcaagttcattgttcataatattaatatatgc 33403653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 71
Target Start/End: Complemental strand, 33361827 - 33361797
Alignment:
Q  41 atctttggaggataaatttatagatttattc 71  Q
    |||||||||||||||||||||||||||||||    
T  33361827 atctttggaggataaatttatagatttattc 33361797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 263 - 330
Target Start/End: Original strand, 17437688 - 17437753
Alignment:
Q  263 aattattgtaaagaaagtgccacaaaatcaaacgcttaaagttcattgttcataatattaatatatgc 330  Q
    ||||||||||||||||||||||| ||||| |||||||||| ||||||||||| | |||||| ||||||    
T  17437688 aattattgtaaagaaagtgccacgaaatc-aacgcttaaa-ttcattgttcacagtattaacatatgc 17437753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 251
Target Start/End: Original strand, 17437626 - 17437658
Alignment:
Q  219 gaagctgtcaagaagcaaccaagctccattatt 251  Q
    |||||||||||||||||||||||||||||||||    
T  17437626 gaagctgtcaagaagcaaccaagctccattatt 17437658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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