View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19996_low_11 (Length: 355)
Name: NF19996_low_11
Description: NF19996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19996_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 139 - 323
Target Start/End: Complemental strand, 34440520 - 34440336
Alignment:
| Q |
139 |
ctgaatcatactgctatattcagttactttatgaatggaacatgacagttaaaaggaaatagaaagacatactttctatcatttgcatttaccaaaagtg |
238 |
Q |
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| T |
34440520 |
ctgaatcatactcctatattcagttactttatgaatggaacatgacagttaaaaggaaatagaaagacatactttctatcatttgcatttaccaaaagtg |
34440421 |
T |
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| Q |
239 |
gtgcataagaagccattgcaacatgatcactgcattagaaatggaaacatataacggtgagtataaaattgtacataatttaaac |
323 |
Q |
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| T |
34440420 |
gtgcataagaagccattgcaacatgatcactgcattagaaatggaaacatatatcggtgagtataaaattgtacataatttaaac |
34440336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 190 - 308
Target Start/End: Complemental strand, 34466637 - 34466518
Alignment:
| Q |
190 |
aaaggaaatagaaagacatactttctatcatttgcatttaccaaaagtggtgcataagaagccattgcaacatgatcactgcattagaaatgga-aacat |
288 |
Q |
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| T |
34466637 |
aaaggaaatagaaagacatactttctgtcatttgcatttaccaaaagtggtgcataagaagccattgcaacatgatcactgcattaaaaatggacaaaat |
34466538 |
T |
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| Q |
289 |
ataacggtgagtataaaatt |
308 |
Q |
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| T |
34466537 |
ataatggtgagtatataatt |
34466518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 34440646 - 34440571
Alignment:
| Q |
13 |
atcatcatgcaataatagtttatcttaaatcttattcatgcagttccccttagcatgttcatacttaggggtaggt |
88 |
Q |
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| T |
34440646 |
atcatcatgcaataatagtttatcttaaatcttattcatgcagttccccttagcatgttcatacttaggggtaggt |
34440571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 182 - 302
Target Start/End: Complemental strand, 34450564 - 34450444
Alignment:
| Q |
182 |
gacagttaaaaggaaatagaaagacatactttctatcatttgcatttaccaaaagtggtgcataagaagccattgcaacatgatcactgcattagaaatg |
281 |
Q |
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|||| |||| ||||||| ||||||||||| ||| ||||| || ||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
34450564 |
gacacttaagaggaaattgaaagacatacactctgtcattcgcgtttacaaaaagtggtgcataagcagccattgcaacatgatcactgcattagaaata |
34450465 |
T |
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| Q |
282 |
gaaacatataacggtgagtat |
302 |
Q |
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| T |
34450464 |
gaaaaatataatggtaagtat |
34450444 |
T |
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