View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19996_low_13 (Length: 344)
Name: NF19996_low_13
Description: NF19996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19996_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 242
Target Start/End: Complemental strand, 8787203 - 8786971
Alignment:
| Q |
10 |
acatcatcatctatcatataatcatttttatctattaagacattcgtatttccacaaatcaccgcagttgtccttgaagcactaacagcacgattatgct |
109 |
Q |
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| T |
8787203 |
acatcatcatctatcatataatcatttttatctattaagacattcgtatttccacaaatcatcgcagttgtccttgaagcactaacggcacgattatgct |
8787104 |
T |
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| Q |
110 |
tcaaaatatcattcctggcctcccgtcttcttaatagcctttgtaacctttttgttttatcatcagcatgagagccgtccgggttaaacatgatcaaagc |
209 |
Q |
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| T |
8787103 |
tcaaaatatcattcctggcctcccgtcttcttaatagccttcgtaacctttttgttttatcatcagcatgagagccatccgggttaaacatgatgaaagc |
8787004 |
T |
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| Q |
210 |
acgctccatttttcctttaatgggaacaaaatc |
242 |
Q |
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| T |
8787003 |
acgctcgatttttcctttaatgggaacaaaatc |
8786971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 39 - 237
Target Start/End: Complemental strand, 8781476 - 8781278
Alignment:
| Q |
39 |
atctattaagacattcgtatttccacaaatcaccgcagttgtccttgaagcactaacagcacgattatgcttcaaaatatcattcctggcctcccgtctt |
138 |
Q |
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| T |
8781476 |
atctattaaaacattcgtatttccacaaatcatcgcagttgttcttgaagcactaacgacacgattgtgcttcaaactattattcctggccttccgtctt |
8781377 |
T |
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| Q |
139 |
cttaatagcctttgtaacctttttgttttatcatcagcatgagagccgtccgggttaaacatgatcaaagcacgctccatttttcctttaatgggaaca |
237 |
Q |
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| T |
8781376 |
cttaatatcctttctaacctttttgttttatcatcagtatgagaatcatccaggttaaacatgattaaagcacgctccatttttcttttaatgggaaca |
8781278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 243 - 323
Target Start/End: Complemental strand, 8786923 - 8786843
Alignment:
| Q |
243 |
aacagcgaaacaatcaattttatcgatataactgatactctatattttaaggaatacatttatctacaaattttaagcact |
323 |
Q |
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| T |
8786923 |
aacagcgaaacaatcaattttatcgatacaactgatactctatatcttaaggaatacatttatctacaaattttaagcact |
8786843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 49 - 169
Target Start/End: Complemental strand, 8781670 - 8781550
Alignment:
| Q |
49 |
acattcgtatttccacaaatcaccgcagttgtccttgaagcactaacagcacgattatgcttcaaaatatcattcctggcctcccgtcttcttaatagcc |
148 |
Q |
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| T |
8781670 |
acatttgtatttgcacaaatcatcgcagttgttcttgaagcactagtgacacgtttgcgcttcaaactatcacttctggcctcttgtcttcttgatagcc |
8781571 |
T |
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| Q |
149 |
tttgtaacctttttgttttat |
169 |
Q |
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| T |
8781570 |
tttttaacccttttcttttat |
8781550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 137
Target Start/End: Complemental strand, 8764546 - 8764421
Alignment:
| Q |
12 |
atcatcatctatcatataatcatttttatctattaagacattcgtatttccacaaatcaccgcagttgtccttgaagcactaacagcacgattatgcttc |
111 |
Q |
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||||||||||||| ||| |||| ||| |||||||| | | |||||| |||||||| |||||| |||| ||| |||||| || || |||| |||||| |
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| T |
8764546 |
atcatcatctatcgtatgatcactttcgtctattaaaattgtggtattttcacaaatctccgcaggtgtctttgtggcactagcaacatgattgtgcttc |
8764447 |
T |
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| Q |
112 |
aaaatatcattcctggcctcccgtct |
137 |
Q |
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||| |||||||| | || |||||||| |
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| T |
8764446 |
aaactatcattcatcgcttcccgtct |
8764421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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