View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19996_low_14 (Length: 329)
Name: NF19996_low_14
Description: NF19996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19996_low_14 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 14 - 329
Target Start/End: Complemental strand, 29280278 - 29279963
Alignment:
| Q |
14 |
cacagatgatgagaacagaacatgaacatcgacataaggaatgtgaacttcgataacaacactgggaagtcaccgagaggagaccacaaatgatgaacac |
113 |
Q |
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| T |
29280278 |
cacaaatgatgagaacagaacgtgaacatcgacataaggaatgtgaacttcgataacaacactgggaagtcaccgagaggagaccacaaatgatgaacac |
29280179 |
T |
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| Q |
114 |
tgatgaatgtccaagaagagttatagtatagaacaaggatcaataggtttcacttaagagtatgtgctatgaaaggaaaacgaaaaggtttagcaagaat |
213 |
Q |
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| T |
29280178 |
tgatgaatgtccaagaagagttatagtatagaacaaggatcaataggtttcacttaagagtatgtgctatgaaaggaaaacgaaaaggtttagcaagaat |
29280079 |
T |
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| Q |
214 |
aatataacactttttcataccnnnnnnnnntttaaactattgttttgtcttannnnnnncagaattaaaaacaaatacaggttgtccataaggtgatatg |
313 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29280078 |
aatataacactttttcataccaaaaaaaaatttaaactattgttttgtcttatttttttcagaattaaaaacaaatacaggttgtccataaggtgatatg |
29279979 |
T |
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| Q |
314 |
aatgcaattgccaaaa |
329 |
Q |
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|||||||||||||||| |
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| T |
29279978 |
aatgcaattgccaaaa |
29279963 |
T |
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