View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19996_low_15 (Length: 321)
Name: NF19996_low_15
Description: NF19996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19996_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 196 - 305
Target Start/End: Original strand, 14291733 - 14291843
Alignment:
| Q |
196 |
tataaaaaccataactttatgcctttt-ttacactgaaaactcaatttgaacacagaatcataaaccaaattacatatccttgtgatttcaatccaattt |
294 |
Q |
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| T |
14291733 |
tataaaaaccataactttatgcctttttttacactgaaaactcaatttgaacacagaatcataaaccaaattacatatccttgtgatttcaatccaattt |
14291832 |
T |
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| Q |
295 |
cttcatcttta |
305 |
Q |
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||||||||||| |
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| T |
14291833 |
cttcatcttta |
14291843 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 11 - 102
Target Start/End: Original strand, 14291109 - 14291200
Alignment:
| Q |
11 |
atgtgtggtgctgttggtgtgtttgttgttgccttttgcgaaggttgcaggttcgaatcctgcattgcctcagaccaaaatttatatgttta |
102 |
Q |
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| T |
14291109 |
atgtgcggtactgttggtgtgtttgttgttgccttttgcgaaggttgcaggttcgaattctgctttgcctcagaccaaaatttatatgttta |
14291200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 188
Target Start/End: Original strand, 14291668 - 14291702
Alignment:
| Q |
154 |
aattcttcatcttctacctcaagacgggtcataaa |
188 |
Q |
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| T |
14291668 |
aattcttcatcttctacctcgagacgggtcataaa |
14291702 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 5e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 197 - 305
Target Start/End: Complemental strand, 23879839 - 23879731
Alignment:
| Q |
197 |
ataaaaaccataactttatgccttttttacactgaaaactcaatttgaacacagaatcataaaccaaattacatatccttgtgatttcaatccaatttct |
296 |
Q |
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| T |
23879839 |
ataaaaaccataactttatgccttttttacactaaaaactcaatttaaacacagaatcataaaccaaattacatatccttgtgatttcaatccaatttct |
23879740 |
T |
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| Q |
297 |
tcatcttta |
305 |
Q |
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||||||||| |
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| T |
23879739 |
tcatcttta |
23879731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 8 - 188
Target Start/End: Complemental strand, 23880047 - 23879871
Alignment:
| Q |
8 |
aatatgtgtggtgctgttggtgtgtttgttgttgccttttgcgaaggttgcaggttcgaatcctgcattgcctcagaccaaaa-tttatatgtttannnn |
106 |
Q |
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| T |
23880047 |
aatatgtgtggtgctgttggtgtgtttgttgttgtcttttgcaaaggttgcaggttcgaatcctgcattgcctcagtccaaaattttatatgtttaatat |
23879948 |
T |
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| Q |
107 |
nnnnnncttttcccaagaccaaaatatgtatgtatatttannnnnnnaattcttcatcttctacctcaagacgggtcataaa |
188 |
Q |
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| T |
23879947 |
tt-----ttttcccaagaccaaaatatgtatgtatatttatttttttaattcttcatcttctacctccaaacgggtcataaa |
23879871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 286
Target Start/End: Original strand, 46151457 - 46151512
Alignment:
| Q |
231 |
aaaactcaatttgaacacagaatcataaaccaaattacatatccttgtgatttcaa |
286 |
Q |
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||||||||||||||||||| |||||| |||||||| |||| | ||||||||||||| |
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| T |
46151457 |
aaaactcaatttgaacacataatcatgaaccaaatcacattttcttgtgatttcaa |
46151512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 305
Target Start/End: Original strand, 33684890 - 33684995
Alignment:
| Q |
200 |
aaaaccataactttatgccttttttacactgaaaactcaatttgaacacagaatcataaaccaaattacatatccttgtgatttcaatccaatttcttca |
299 |
Q |
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||||||||||||||| ||| |||| |||| |||||||||||| ||| ||| ||| |||||||| ||| || |||||||||||| | | ||||| || |
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| T |
33684890 |
aaaaccataactttaagccattttaacaccaaaaactcaattttaacctagactcacgaaccaaataccatttctttgtgatttcaagcaattttctgca |
33684989 |
T |
|
| Q |
300 |
tcttta |
305 |
Q |
| |
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|||||| |
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|
| T |
33684990 |
tcttta |
33684995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 305
Target Start/End: Original strand, 34904420 - 34904525
Alignment:
| Q |
200 |
aaaaccataactttatgccttttttacactgaaaactcaatttgaacacagaatcataaaccaaattacatatccttgtgatttcaatccaatttcttca |
299 |
Q |
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||||||||||||||| ||| |||| |||| |||||||||||| ||| ||| ||| |||||||| ||| || |||||||||||| | | ||||| || |
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| T |
34904420 |
aaaaccataactttaagccattttaacaccaaaaactcaattttaacctagactcacgaaccaaataccatttctttgtgatttcaagcaattttctgca |
34904519 |
T |
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| Q |
300 |
tcttta |
305 |
Q |
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|||||| |
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| T |
34904520 |
tcttta |
34904525 |
T |
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