View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19996_low_16 (Length: 306)
Name: NF19996_low_16
Description: NF19996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19996_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 5292799 - 5292513
Alignment:
| Q |
1 |
tattatacaatttgtaatggattatttaaccttagaacattgattaactgtttatctttaatggattatatatatgctgtgcaggtgaaatttcatggat |
100 |
Q |
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| T |
5292799 |
tattgtacaatttgtaatggattatttaaccttagaacattgattaactgtttatctttaatggattatatatatgctgtgcaggtgaaatttcatggat |
5292700 |
T |
|
| Q |
101 |
ttgtttgaagaatttcgatttcaaatctgtatgttctcaaaggagcttaatagacactatcaatatactctttgtatgtgtctattgcacatctttgatt |
200 |
Q |
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| T |
5292699 |
ttgtttgaagaatttcgatttcaattctttatgttctcaaaggagcttaatagacactatcaatatactctttgtatgtgtctattgcacatctttgatt |
5292600 |
T |
|
| Q |
201 |
atcactttaatcnnnnnnngttctacaaatggaagccacggaaaatgctggattttcattattgtctcaatttgttgtggtgctatt |
287 |
Q |
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| T |
5292599 |
atcactttaatcagaaaaagttctacaaatggaagccacggaaaatgctggattttcattattgtctcaatttgttgtggtactatt |
5292513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 80 - 279
Target Start/End: Original strand, 15123618 - 15123817
Alignment:
| Q |
80 |
tgcaggtgaaatttcatggatttgtttgaagaatttcgatttcaaatctgtatgttctcaaaggagcttaatagacactatcaatatactctttgtatgt |
179 |
Q |
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| T |
15123618 |
tgcaggtgaaatttcatggacttgtcttaagaagtttgatttaaattctttatgttctcaaagaagcttagtagacacaatcaacatactctttctctgt |
15123717 |
T |
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| Q |
180 |
gtctattgcacatctttgattatcactttaatcnnnnnnngttctacaaatggaagccacggaaaatgctggattttcattattgtctcaatttgttgtg |
279 |
Q |
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| T |
15123718 |
gtctactacacatctttgcttatcactttaatcagaaaaagttgtacaaatgaaagccaaagaaaatgctggaatttccttattgtctcaatctgttgtg |
15123817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 5284750 - 5284701
Alignment:
| Q |
28 |
aaccttagaacattgattaactgtttatctttaatggattatatatatgc |
77 |
Q |
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| T |
5284750 |
aaccttggaacattgattaattgtttctctttaatggattatatatatgc |
5284701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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