View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19996_low_2 (Length: 567)
Name: NF19996_low_2
Description: NF19996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19996_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 518; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 518; E-Value: 0
Query Start/End: Original strand, 12 - 549
Target Start/End: Original strand, 54791084 - 54791621
Alignment:
| Q |
12 |
aagcaaaggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagactgacctagtaaatgaagcagaccaaata |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
54791084 |
aagcaaaggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagaccgacctagtaaatgaagcagaccaaata |
54791183 |
T |
|
| Q |
112 |
cctcccccggctttggccgaagctgtcaaccaacctgcaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaact |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791184 |
cctcccccggctttggccgaagctgtcaaccaacctgtaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaact |
54791283 |
T |
|
| Q |
212 |
ttaacgatgctggatactggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacaatcaggctgtagtagactt |
311 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
54791284 |
ttaacgattctggatactggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacactcaggctgtagtagactt |
54791383 |
T |
|
| Q |
312 |
caacaatgactggaatggtttcatgaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggacatgcag |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791384 |
caacaatgactggaatggtttcatgaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggacatgcag |
54791483 |
T |
|
| Q |
412 |
gccagttcagacatttatggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccttcggaacaaaggaaggctgagaacaa |
511 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54791484 |
gccagttcagacatttatggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccttcggaacaaaggaaggctgagaacag |
54791583 |
T |
|
| Q |
512 |
tttcagatattgttcaagaagcatctgaaagcagaaat |
549 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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| T |
54791584 |
tttcagatattgttcaagaagcatctgaaagcagaaat |
54791621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 12 - 549
Target Start/End: Original strand, 52283742 - 52284279
Alignment:
| Q |
12 |
aagcaaaggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagactgacctagtaaatgaagcagaccaaata |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
52283742 |
aagcaaaggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtttttggagactgacctagcaaatgaagcagaccaaata |
52283841 |
T |
|
| Q |
112 |
cctcccccggctttggccgaagctgtcaaccaacctgcaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaact |
211 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||| |
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|
| T |
52283842 |
cctcccccgcctttgaccgaagctgtcaaccaacctgcaccacaggttgagaactatgtctggccatggacaggcataattgttaatattaagagcaaac |
52283941 |
T |
|
| Q |
212 |
ttaacgatgctggatactggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacaatcaggctgtagtagactt |
311 |
Q |
| |
|
| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
52283942 |
tgaatgattctggatactggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacactcaggctgtagtagactt |
52284041 |
T |
|
| Q |
312 |
caacaatgactggaatggtttcatgaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggacatgcag |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52284042 |
caacaatgactggaatggtttcatgaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggacatgcag |
52284141 |
T |
|
| Q |
412 |
gccagttcagacatttatggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccttcggaacaaaggaaggctgagaacaa |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52284142 |
gccagttcagacatttatggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccttcggaacaaaggaaggctgagaacaa |
52284241 |
T |
|
| Q |
512 |
tttcagatattgttcaagaagcatctgaaagcagaaat |
549 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52284242 |
tttcagatattgttcaagaagcatctgaaagcagaaat |
52284279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 12 - 542
Target Start/End: Complemental strand, 54778061 - 54777532
Alignment:
| Q |
12 |
aagcaaaggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagactgacctagtaaatgaagcagaccaaata |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
54778061 |
aagcaaaggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagaccgacctagtaaatgaagcagaccaaata |
54777962 |
T |
|
| Q |
112 |
cctcccccggctttggccgaagctgtcaaccaacctgcaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaact |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
54777961 |
cctcccccggctttggccgaagctgtcaaccaacctgtaccgcaggttgagaattatgt-tggccatggacaggtataatcgttaacattaagagcaacc |
54777863 |
T |
|
| Q |
212 |
ttaacgatgctggatactggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacaatcaggctgtagtagactt |
311 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
54777862 |
ttaacgattctggatactggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacactcaggctgtagtagactt |
54777763 |
T |
|
| Q |
312 |
caacaatgactggaatggtttcatgaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggacatgcag |
411 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| | |
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|
| T |
54777762 |
caacaatgactggaatggtttcaagaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggaatggaattcaatggacatgctg |
54777663 |
T |
|
| Q |
412 |
gccagttcagacatttatggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccttcggaacaaaggaaggctgagaacaa |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
54777662 |
gccagttcagacatttatggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccctcggaacaaaggaaggctgagaacaa |
54777563 |
T |
|
| Q |
512 |
tttcagatattgttcaagaagcatctgaaag |
542 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |
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|
| T |
54777562 |
tttcggatattgttcaagaagcatctgaaag |
54777532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 14 - 549
Target Start/End: Original strand, 799020 - 799549
Alignment:
| Q |
14 |
gcaaaggttcagcaaacagaaacgccaaacaaaaggcaaaccacctcgctctggcaaagtatttggagactgacctagtaaatgaagcagaccaaatacc |
113 |
Q |
| |
|
|||||||||| |||||||||| | | || ||||| ||||||||||| ||||||||||||| |||| ||||||| ||| |||||||||||||||| |||| |
|
|
| T |
799020 |
gcaaaggttcggcaaacagaagcacaaagcaaaaagcaaaccacctggctctggcaaagtttttgaggactgacttagcaaatgaagcagaccaagtacc |
799119 |
T |
|
| Q |
114 |
tcccccggctttggccgaagctgtcaaccaacctgcaccgcaggttgagaattatgtctggccatggacaggcataatcgttaacattaagagcaacttt |
213 |
Q |
| |
|
|| |||||||||| | | |||||| |||||||| | | |||||||| || || ||||| |||||||||||| | || ||||| | |||| | |
|
|
| T |
799120 |
tcgcccggctttgactgtagctgttgtccaacctgtcc---aagttgagaactacgtttggccgtggacaggcatacttgtcaacataa---gcaaatca |
799213 |
T |
|
| Q |
214 |
aacgatgctggatactggctaaaggaatttgccaagtacagaccattggatgtccatgtattcttcatggatggtgacaatcaggctgtagtagacttca |
313 |
Q |
| |
|
| ||| ||||||||| || |||||||||||| ||||||| ||| |||| ||| ||| ||||| ||||||||| || |||||| ||||||||| |
|
|
| T |
799214 |
catgattctggatacttgcaaaaggaatttgctaagtacaaaccgttggctgttcatacgttcttgatggatggtaactccgtggctgttatagacttca |
799313 |
T |
|
| Q |
314 |
acaatgactggaatggtttcatgaatgcaagtgaatttgagaaatcctttgaaactaaacatcatgggaagaaggactggaattcaaaggacatgcaggc |
413 |
Q |
| |
|
|||||||||||||||| || |||||||||||||| ||||||||| |||||| ||||||| || ||| || ||||| |||||||| | |||| |||||| |
|
|
| T |
799314 |
acaatgactggaatgggtttatgaatgcaagtgagcttgagaaatgctttgagactaaacgtcgtggaaaaaaggattggaattccatggacttgcagga |
799413 |
T |
|
| Q |
414 |
cagttcagacatttatggatgggttgcacgtgaagatgattataattgtggagggccaatcggggagtaccttcggaacaaaggaaggctgagaacaatt |
513 |
Q |
| |
|
||||||||| ||||| || |||||||||||||||||||||||||||||| |||| || |||||||||||||| ||||||||||||||||| |||||| |
|
|
| T |
799414 |
cagttcagagatttacggttgggttgcacgtgaagatgattataattgtccagggttgattggggagtaccttcgcaacaaaggaaggctgaggacaatt |
799513 |
T |
|
| Q |
514 |
tcagatattgttcaagaagcatctgaaagcagaaat |
549 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
799514 |
tcagatatagttcaagaagcatctcaaagcagaaat |
799549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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