View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19996_low_20 (Length: 294)
Name: NF19996_low_20
Description: NF19996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19996_low_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 11 - 275
Target Start/End: Complemental strand, 29279604 - 29279340
Alignment:
| Q |
11 |
cagagacgagtgaaagtgatgaaccaaacttagcaagcattgttatcgtctactaatgcatacaaaaggattcactagagttatgacattgttatcgtat |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
29279604 |
cagacacgagtgaaagtgatgaaccaaacttagcaagcattgttatcgtctactaatgcatacaaaaggattcactagagttatgacattgttatcgtct |
29279505 |
T |
|
| Q |
111 |
actaatgcaagccaaccatggctacaaccggccaaacacattttactttcaatgatggaaggatgggataattgaatagggtactctttctcacttagaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29279504 |
actaatgcaagccaaccatggctacaaccggccaaacacattttactttcaatgatggaaggatgggataattgaatagggtactctttctcacttagaa |
29279405 |
T |
|
| Q |
211 |
tactatacaacgatctcttcttcatctgtgatattgtgtgtatacgataatattggtctgagagg |
275 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
29279404 |
tactatacaacgatctcttcttcgtctgtgatattgtgtgtatacaataatattggtctgagagg |
29279340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 74 - 256
Target Start/End: Complemental strand, 29282514 - 29282335
Alignment:
| Q |
74 |
aaaaggattcactagagttatgacattgttatcgtatactaatgcaagccaaccatggctacaaccggccaaacacattttactttcaatgatggaagga |
173 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| | || ||||||||||||||||||||||| || ||||||| ||| || | ||||||||||| |
|
|
| T |
29282514 |
aaaaggattcactagagttatggcattgttatcatccaccaatgcaagccaaccatggctacagcct---aaacacaatttcattgtattgatggaagga |
29282418 |
T |
|
| Q |
174 |
tgggataattgaatagggtactctttctcacttagaatactatacaacgatctcttcttcatctgtgatattgtgtgtatacg |
256 |
Q |
| |
|
||||| |||||||||||||| ||||||| |||||| ||| ||||||| ||| ||||||| |||||||||||| |||||||| |
|
|
| T |
29282417 |
tgggagaattgaatagggtagtctttcttacttaggatattatacaatgatatcttctttgtctgtgatattgcatgtatacg |
29282335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 74 - 217
Target Start/End: Complemental strand, 29270138 - 29269998
Alignment:
| Q |
74 |
aaaaggattcactagagttatgacattgttatcgtatactaatgcaagccaaccatggctacaaccggccaaacacattttactttcaatgatggaagga |
173 |
Q |
| |
|
|||||||||||||||||||||| ||||||| | | |||| |||||||||||||||||||||||| ||||| ||||||||| ||||||||||||| |
|
|
| T |
29270138 |
aaaaggattcactagagttatggcattgtttttatccactagtgcaagccaaccatggctacaacct---aaacatgttttacttttaatgatggaagga |
29270042 |
T |
|
| Q |
174 |
tgggataattgaatagggtactctttctcacttagaatactata |
217 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||| | |||||||| |
|
|
| T |
29270041 |
tgggataactgaatagggtactctttcgcacttgggatactata |
29269998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 201
Target Start/End: Complemental strand, 29287965 - 29287841
Alignment:
| Q |
74 |
aaaaggattcactagagttatgacattgttatcgtatactaatgcaagccaaccatggctacaaccggccaaacacattttactttcaatgatggaagga |
173 |
Q |
| |
|
||||||||||||||||||||| ||||||||| | |||| ||||||||||||||||||||||| ||||||| ||||||| | ||||||||||||| |
|
|
| T |
29287965 |
aaaaggattcactagagttatagcattgttattatccactagtgcaagccaaccatggctacaac---ccaaacatgttttactcttaatgatggaagga |
29287869 |
T |
|
| Q |
174 |
tgggataattgaatagggtactctttct |
201 |
Q |
| |
|
|||||||| ||||||| |||||||||| |
|
|
| T |
29287868 |
tgggataacggaataggatactctttct |
29287841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University