View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19996_low_24 (Length: 265)
Name: NF19996_low_24
Description: NF19996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19996_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 11 - 135
Target Start/End: Complemental strand, 40843723 - 40843599
Alignment:
| Q |
11 |
gaagaagcaggaattctgaaaagccatggacctttggctttccttaaggtttgtgtttaaggatgtattcatgagcataagagtctattgatctacatag |
110 |
Q |
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| T |
40843723 |
gaagaagcaggaattctgaaaagccatggacctttggctttccttaaggtttgtgtttaaggatgtattcatgagcataagagtctattgatctacatag |
40843624 |
T |
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| Q |
111 |
tacagaaacttcaaattaaaagtgt |
135 |
Q |
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| T |
40843623 |
tacagacacttcaaattaaaagtgt |
40843599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 40839105 - 40838967
Alignment:
| Q |
11 |
gaagaagcaggaattctgaaaagccatggacctttggctttccttaaggtttgtgtttaaggatgtattcatgagcataagagtctattgatctacatag |
110 |
Q |
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| T |
40839105 |
gaagaagcaggaattctgaaaagccatggaccattggctttccgcaaggta---gtttaaggatgtattcatgagcataagcggctattcgtctacaatg |
40839009 |
T |
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| Q |
111 |
tacagaaacttcaaattaaaag--tgtctggttttcgacata |
150 |
Q |
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| T |
40839008 |
tacagacacttcaaattaaaagtttgtctggtgttcgacata |
40838967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 80
Target Start/End: Complemental strand, 40849663 - 40849594
Alignment:
| Q |
11 |
gaagaagcaggaattctgaaaagccatggacctttggctttccttaaggtttgtgtttaaggatgtattc |
80 |
Q |
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| T |
40849663 |
gaagaagcaggagatctgaaaagccacggacctcttgctttcctcaaggtttgtgttgaaggatgtattc |
40849594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 190 - 249
Target Start/End: Complemental strand, 40843564 - 40843505
Alignment:
| Q |
190 |
agctattggttcgcttgtatttaactatatatannnnnnnggaacaataggtgaaagagg |
249 |
Q |
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| T |
40843564 |
agctattggttcgcttgtatttaactatatatttttttttggaacaataggtgaaagagg |
40843505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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