View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19996_low_28 (Length: 247)
Name: NF19996_low_28
Description: NF19996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19996_low_28 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 41453618 - 41453389
Alignment:
| Q |
18 |
caaatctcgcaaggtacatattctctaacttctccacctaccacaatcatttattgacttaaacgtcagagtgtttatagatacattcactccttagcct |
117 |
Q |
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| T |
41453618 |
caaatctcgcaaggtacatattctctaatttctccacctaccacaatcatttattgacttaaacgttagagtgtttacagatagattcactccttagcct |
41453519 |
T |
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| Q |
118 |
ttgccgtcatcaccttgtttcactaatttattaccaccgtgagtatctttattctattcgatcgatatcttctttgttcacaagagtcggcatttactac |
217 |
Q |
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| T |
41453518 |
tcgccgtcatcaccttgtttcactaatttattaccaccgtgagtatctttattccattcgatcgatatcttctttgttcacaagagtcggcatttactat |
41453419 |
T |
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| Q |
218 |
taattattatttttacttgttttcatttat |
247 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
41453418 |
taattattatttttacttgttttcatttat |
41453389 |
T |
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