View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19996_low_3 (Length: 548)
Name: NF19996_low_3
Description: NF19996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19996_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 431; Significance: 0; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 1 - 500
Target Start/End: Original strand, 48043242 - 48043734
Alignment:
| Q |
1 |
cctgtatggtaggtaaataagtataatactctctttgatacctttgttggtaaacctagttatcacaggctatcagattggatttaaagccagtcaaata |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
48043242 |
cctgtatggtaggtaaataagtataatactctctttgatacctttgttggtaaacctagttattacaagctatcagattggatttaaagccagtcaaata |
48043341 |
T |
|
| Q |
101 |
tggaaaagaaaaactagtagtatgatacaccaatatcatcccttcgatgaccttgatatcagtctgcaatgtaacattcaaatagattcatatggcagaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48043342 |
tggaaaagaaaaactagtagtatgatacaccaatatcatcccttcaatgaccttgatatcagtctgcaatgtaacattcaaatagattcatatggcagaa |
48043441 |
T |
|
| Q |
201 |
gttgagagcttcagttgtttgctttagaatgttttacaaaccgacaaattactgagtcaatgttgttggagtttttacatgagatcatgatgtaacaaac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48043442 |
gttgagagcttcagttgtttgctttagaatgttttacaaaccgacaaattactgagtcaatgttgttggagtttttacatgagatcatgatgtaacaaac |
48043541 |
T |
|
| Q |
301 |
ttccctcccattgattgatttcagtcccctgctcatgtgaaacaacatcatatgaatggaaagtacgagcacatcctgnnnnnnngcaaattttttgaaa |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
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| T |
48043542 |
ttccctcccattgattgatttcagtcccctgctcatgtgaaacaacatcatatgaatg--------gagcacatcctgaaaaaaagcaaattttttgaaa |
48043633 |
T |
|
| Q |
401 |
tcaaaggatcacacactacttaaatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatcttatt-acctagaaccagcagtggaatcc |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
48043634 |
tcaaaggatcacacactacttaaatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattaacctagaaccagcagtggaatcc |
48043733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 128 - 378
Target Start/End: Original strand, 48056587 - 48056836
Alignment:
| Q |
128 |
caccaatatcatcccttcgatgaccttgatatcagtctgcaatgtaacattcaaatagattcatatggcagaagttgagagcttcagttgtttgctttag |
227 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||| |||| |
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|
| T |
48056587 |
caccaatatcatcccttcaatgaccttgatatcagtctgcaatgtaacattcaaatagaatcctagggcagaagttgagagcttcagttctttgcgttag |
48056686 |
T |
|
| Q |
228 |
aatgttttacaaaccgacaaattactgagtcaatgttgttggagtttttacatgagatcatgatgtaacaaacttccctcccattgattgatttcagtcc |
327 |
Q |
| |
|
||||||||||||||| |||||| |||||||| |||||| |||||||||||| ||||||||||||| |||||||||| ||| |||| ||||||||||||| |
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| T |
48056687 |
aatgttttacaaaccaacaaataactgagtcgatgttggtggagtttttacttgagatcatgatgcaacaaacttctctctcatttattgatttcagtct |
48056786 |
T |
|
| Q |
328 |
cctgctcatgtgaaacaacatcatatgaatggaaagtacgagcacatcctg |
378 |
Q |
| |
|
|| | || |||||||||||||| ||||| ||||||||| ||||||||||| |
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|
| T |
48056787 |
ccagtgcacgtgaaacaacatca-atgaaaggaaagtacaagcacatcctg |
48056836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 274 - 495
Target Start/End: Original strand, 48051481 - 48051701
Alignment:
| Q |
274 |
tttacatgagatcatgatgtaacaaacttccctcccattgattgatttcagtcccctgctcatgtgaaacaacatcatatgaatggaaagtacgagcaca |
373 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||| || ||||||| |||| |
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|
| T |
48051481 |
tttacacgagatcatgatgtaacaaacttccttcccatatattgatttcagtcccctgcacatgtgaaacaacatcatatgaaaggcaagtacggacaca |
48051580 |
T |
|
| Q |
374 |
tcctgnnnnnnngcaaattttttgaaatcaaaggatcacacactacttaaatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatctt |
473 |
Q |
| |
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||||| || || ||| ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
48051581 |
tcctgattaaaagctaaaattt-gaaatcataggatcacacactacttaaaccttttctgtcaggtcttgcttagacaaatccccaggtttatcaatctt |
48051679 |
T |
|
| Q |
474 |
attacctagaaccagcagtgga |
495 |
Q |
| |
|
|||| |||||||||||||||| |
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|
| T |
48051680 |
gttacttagaaccagcagtgga |
48051701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 129 - 309
Target Start/End: Original strand, 48051312 - 48051480
Alignment:
| Q |
129 |
accaatatcatcccttcgatgaccttgatatcagtctgcaatgtaacattcaaatagattcatatggcagaagttgagagcttcagttgtttgctttaga |
228 |
Q |
| |
|
||||| |||||| |||| | ||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||| |
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|
| T |
48051312 |
accaacatcatctcttcaaagaccttgatatcagtctgcaatgtaacattcaaattgattcatatggcaagagttgagagcttcaattgtttgctttaga |
48051411 |
T |
|
| Q |
229 |
atgttttacaaaccgacaaattactgagtcaatgttgttggagtttttacatgagatcatgatgtaacaaacttccctccc |
309 |
Q |
| |
|
||||||| || |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
48051412 |
atgtttt------------ataactgagtccatgttgttggagtttttacacgagatcatgatgtaacaaacttccctccc |
48051480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 137 - 331
Target Start/End: Original strand, 48037329 - 48037528
Alignment:
| Q |
137 |
catcccttcgatgaccttgatatcagtctgcaatgtaacattcaaatagattcatatggcagaag-ttgagagcttcagttgtttgctttagaatgtttt |
235 |
Q |
| |
|
||||||| | ||||| ||||||||||||||||||| |||||||||||||||||| | |||||||| |||||||||| |||| |||||||||||||| ||| |
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|
| T |
48037329 |
catccctaccatgacattgatatcagtctgcaatgcaacattcaaatagattcacagggcagaagtttgagagcttaagttctttgctttagaatgcttt |
48037428 |
T |
|
| Q |
236 |
acaaaccgacaaattactgagtc----aatgttgttggagtttttacatgagatcatgatgtaacaaacttccctcccattgattgatttcagtcccctg |
331 |
Q |
| |
|
||||| | || ||| |||||||| ||||||| || ||||||||||||||||||||| | |||||||||| || ||||||| |||| |||||||||| |
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|
| T |
48037429 |
acaaatcaactaataactgagtcaattaatgttggtgaagtttttacatgagatcatgaagcaacaaacttctctttcattgatggattccagtcccctg |
48037528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 150 - 284
Target Start/End: Original strand, 48045200 - 48045331
Alignment:
| Q |
150 |
accttgatatcagtctgcaatgtaacattcaaatagattcatatggcagaagttgagagcttcagttgtttgctttag---aatgttttacaaaccgaca |
246 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||||||||| ||||| ||||||| |||| |||||||||| ||||||||||||| | || |
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|
| T |
48045200 |
accttgatatcaatctgcaatgcaacattcaaatagattcatagggcaggagttgag------agttctttgctttagaaaaatgttttacaaagcaacg |
48045293 |
T |
|
| Q |
247 |
aattactgagtcaatgttgttggagtttttacatgaga |
284 |
Q |
| |
|
|| |||||| |||||||| || ||||||||||||||| |
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|
| T |
48045294 |
cataactgagccaatgttggtgtagtttttacatgaga |
48045331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 48051154 - 48051209
Alignment:
| Q |
12 |
ggtaaataagtataatactctctttgatacctttgttggtaaacctagttatcaca |
67 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
48051154 |
ggtaaataagtataatactctctttgatacctttgttggtaaaccaagctatcaca |
48051209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 411 - 488
Target Start/End: Original strand, 48056891 - 48056968
Alignment:
| Q |
411 |
acacactacttaaatcttttttgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattacctagaaccag |
488 |
Q |
| |
|
||||| |||||| ||||||| |||| |||||||||||||||| | ||||||||||||||||||||||| |||||||| |
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|
| T |
48056891 |
acacagtacttacatcttttctgtcgtgtcttgcttagacaaagcaccaggtttgtcaatcttattaccaagaaccag |
48056968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 432 - 499
Target Start/End: Original strand, 48045485 - 48045552
Alignment:
| Q |
432 |
tgtcaggtcttgcttagacaaatccccaggtttgtcaatcttattacctagaaccagcagtggaatcc |
499 |
Q |
| |
|
|||| |||||||||||||||||| ||||||||||||| |||||||||| |||||||| | |||||| |
|
|
| T |
48045485 |
tgtcgggtcttgcttagacaaattgtcaggtttgtcaattttattacctaaaaccagcaattgaatcc |
48045552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 65
Target Start/End: Original strand, 48056495 - 48056532
Alignment:
| Q |
28 |
actctctttgatacctttgttggtaaacctagttatca |
65 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
48056495 |
actctctttgatacctttgatggtaaaccaagttatca |
48056532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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