View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19996_low_33 (Length: 216)

Name: NF19996_low_33
Description: NF19996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19996_low_33
NF19996_low_33
[»] chr1 (35 HSPs)
chr1 (1-216)||(45127685-45127909)
chr1 (44-125)||(7551247-7551329)
chr1 (44-87)||(4647112-4647155)
chr1 (44-82)||(7587073-7587111)
chr1 (44-82)||(25137074-25137112)
chr1 (36-73)||(45717222-45717259)
chr1 (44-111)||(10658743-10658819)
chr1 (37-73)||(48609647-48609683)
chr1 (37-73)||(52711151-52711187)
chr1 (38-73)||(10896013-10896048)
chr1 (44-82)||(2207720-2207758)
chr1 (44-82)||(4008935-4008973)
chr1 (44-82)||(4057735-4057773)
chr1 (44-82)||(7603653-7603691)
chr1 (44-82)||(10383215-10383253)
chr1 (44-82)||(14006978-14007016)
chr1 (44-82)||(14410869-14410907)
chr1 (44-82)||(15358467-15358505)
chr1 (44-82)||(17964047-17964085)
chr1 (44-82)||(26451116-26451154)
chr1 (44-82)||(26507542-26507580)
chr1 (44-82)||(31267089-31267127)
chr1 (44-82)||(34076184-34076222)
chr1 (44-82)||(35767151-35767189)
chr1 (44-82)||(36449625-36449663)
chr1 (44-82)||(40723623-40723661)
chr1 (44-82)||(45716880-45716918)
chr1 (44-82)||(47632779-47632817)
chr1 (44-82)||(48723460-48723498)
chr1 (44-82)||(52710808-52710846)
chr1 (44-85)||(4574200-4574241)
chr1 (44-81)||(10372886-10372923)
chr1 (44-81)||(14744066-14744103)
chr1 (44-85)||(28253907-28253948)
chr1 (37-73)||(40723282-40723318)
[»] scaffold0493 (1 HSPs)
scaffold0493 (44-111)||(6769-6837)
[»] chr7 (22 HSPs)
chr7 (37-116)||(21062298-21062378)
chr7 (44-125)||(46158189-46158268)
chr7 (44-87)||(6972432-6972476)
chr7 (44-80)||(7901312-7901348)
chr7 (37-73)||(41098679-41098715)
chr7 (48-87)||(42988967-42989007)
chr7 (44-82)||(5029337-5029375)
chr7 (44-82)||(9900664-9900702)
chr7 (44-82)||(17920769-17920807)
chr7 (44-82)||(23023649-23023687)
chr7 (44-82)||(28642420-28642458)
chr7 (44-82)||(33772511-33772549)
chr7 (44-82)||(34651713-34651751)
chr7 (44-82)||(36040068-36040106)
chr7 (44-82)||(39035970-39036008)
chr7 (44-73)||(499017-499046)
chr7 (33-97)||(7626478-7626543)
chr7 (76-125)||(36039497-36039546)
chr7 (37-73)||(27428712-27428748)
chr7 (76-124)||(29738234-29738282)
chr7 (37-69)||(41327558-41327590)
chr7 (37-73)||(47463365-47463401)
[»] chr6 (9 HSPs)
chr6 (44-111)||(30753914-30753990)
chr6 (37-73)||(16894031-16894067)
chr6 (44-82)||(945982-946020)
chr6 (44-82)||(13400210-13400248)
chr6 (44-82)||(15053840-15053878)
chr6 (44-82)||(19693278-19693316)
chr6 (44-82)||(20510146-20510184)
chr6 (44-82)||(22007284-22007322)
chr6 (37-82)||(2857379-2857424)
[»] chr3 (38 HSPs)
chr3 (44-111)||(53328647-53328712)
chr3 (36-73)||(25578184-25578221)
chr3 (37-82)||(30786506-30786551)
chr3 (44-85)||(37127007-37127048)
chr3 (44-85)||(42367880-42367921)
chr3 (37-73)||(19878181-19878217)
chr3 (44-111)||(30778661-30778726)
chr3 (44-111)||(40126793-40126858)
chr3 (44-111)||(45454469-45454534)
chr3 (36-83)||(41642418-41642465)
chr3 (44-82)||(1486883-1486921)
chr3 (44-82)||(4735906-4735944)
chr3 (44-82)||(8339797-8339835)
chr3 (44-82)||(10182162-10182200)
chr3 (44-82)||(15490691-15490729)
chr3 (44-82)||(16644756-16644794)
chr3 (44-82)||(23878733-23878771)
chr3 (44-82)||(24342800-24342838)
chr3 (44-82)||(28055188-28055226)
chr3 (44-82)||(28065613-28065651)
chr3 (44-82)||(29167000-29167038)
chr3 (44-82)||(31269719-31269757)
chr3 (44-82)||(33391160-33391198)
chr3 (44-82)||(34225961-34225999)
chr3 (44-82)||(36778001-36778039)
chr3 (66-111)||(41642559-41642605)
chr3 (44-82)||(43127617-43127655)
chr3 (44-103)||(43729897-43729958)
chr3 (44-82)||(50362525-50362563)
chr3 (44-82)||(53629123-53629161)
chr3 (44-82)||(55006087-55006125)
chr3 (37-82)||(25578519-25578564)
chr3 (44-81)||(43660544-43660581)
chr3 (48-85)||(49612415-49612452)
chr3 (37-73)||(16787280-16787316)
chr3 (37-73)||(23251940-23251976)
chr3 (44-80)||(30664224-30664260)
chr3 (37-73)||(42367539-42367575)
[»] scaffold0029 (3 HSPs)
scaffold0029 (44-87)||(41972-42015)
scaffold0029 (44-87)||(48090-48133)
scaffold0029 (44-87)||(16925-16968)
[»] chr8 (24 HSPs)
chr8 (44-94)||(1048384-1048435)
chr8 (44-87)||(44090616-44090659)
chr8 (44-82)||(27923652-27923690)
chr8 (37-82)||(35209676-35209721)
chr8 (37-73)||(30611245-30611281)
chr8 (37-73)||(45421733-45421769)
chr8 (31-125)||(27923924-27924016)
chr8 (44-82)||(7637178-7637216)
chr8 (44-82)||(8076264-8076302)
chr8 (44-82)||(11385502-11385540)
chr8 (44-82)||(13082801-13082839)
chr8 (44-82)||(13699441-13699479)
chr8 (44-82)||(17918934-17918972)
chr8 (44-82)||(24541977-24542015)
chr8 (44-82)||(27519605-27519643)
chr8 (44-82)||(28174373-28174411)
chr8 (44-82)||(30378126-30378164)
chr8 (44-82)||(34058694-34058732)
chr8 (44-82)||(39106991-39107029)
chr8 (44-82)||(41219602-41219640)
chr8 (44-82)||(41724816-41724854)
chr8 (37-125)||(45239830-45239915)
chr8 (76-125)||(36610780-36610829)
chr8 (44-85)||(43470487-43470528)
[»] chr4 (31 HSPs)
chr4 (44-82)||(1776765-1776803)
chr4 (44-82)||(23709005-23709043)
chr4 (44-82)||(39269694-39269732)
chr4 (37-82)||(42931279-42931324)
chr4 (37-73)||(10386488-10386524)
chr4 (37-73)||(39789171-39789207)
chr4 (33-77)||(41172940-41172984)
chr4 (44-87)||(29247029-29247072)
chr4 (44-82)||(343853-343891)
chr4 (44-82)||(4553308-4553346)
chr4 (44-82)||(6203105-6203143)
chr4 (44-82)||(6488460-6488498)
chr4 (44-82)||(8949557-8949595)
chr4 (44-82)||(9428003-9428041)
chr4 (44-82)||(16618980-16619018)
chr4 (44-82)||(18092652-18092690)
chr4 (44-82)||(22515597-22515635)
chr4 (44-82)||(23064001-23064039)
chr4 (44-82)||(24282001-24282039)
chr4 (44-82)||(25768150-25768188)
chr4 (37-71)||(28706394-28706428)
chr4 (44-82)||(31312081-31312119)
chr4 (44-82)||(35627136-35627174)
chr4 (44-82)||(39788827-39788865)
chr4 (44-82)||(47016374-47016412)
chr4 (44-82)||(52224479-52224517)
chr4 (44-82)||(52823485-52823523)
chr4 (44-81)||(34756856-34756893)
chr4 (37-82)||(52788980-52789025)
chr4 (45-73)||(11996851-11996879)
chr4 (38-82)||(47876057-47876101)
[»] chr5 (25 HSPs)
chr5 (44-85)||(2567546-2567587)
chr5 (37-73)||(796159-796195)
chr5 (37-73)||(8980282-8980318)
chr5 (37-73)||(18404644-18404680)
chr5 (37-73)||(22671256-22671292)
chr5 (37-73)||(25001142-25001178)
chr5 (37-73)||(32299551-32299587)
chr5 (44-82)||(5597868-5597906)
chr5 (44-82)||(6450073-6450111)
chr5 (44-82)||(7573114-7573152)
chr5 (44-82)||(8979941-8979979)
chr5 (44-82)||(19928653-19928691)
chr5 (44-82)||(20452965-20453003)
chr5 (44-82)||(22981920-22981958)
chr5 (44-82)||(24333947-24333985)
chr5 (44-82)||(25000802-25000840)
chr5 (44-82)||(27189002-27189040)
chr5 (44-82)||(27432590-27432628)
chr5 (44-82)||(32299883-32299921)
chr5 (44-82)||(34818849-34818887)
chr5 (44-82)||(38983337-38983375)
chr5 (44-82)||(41906794-41906832)
chr5 (44-73)||(9265387-9265416)
chr5 (31-71)||(9125542-9125582)
chr5 (37-73)||(36816670-36816706)
[»] chr2 (21 HSPs)
chr2 (37-82)||(25553536-25553581)
chr2 (37-125)||(39670616-39670705)
chr2 (37-73)||(7401935-7401971)
chr2 (37-73)||(42520702-42520738)
chr2 (37-72)||(6206117-6206152)
chr2 (39-82)||(10214937-10214980)
chr2 (44-87)||(12620267-12620310)
chr2 (44-91)||(39362904-39362951)
chr2 (44-82)||(5363731-5363769)
chr2 (44-82)||(13803224-13803262)
chr2 (44-82)||(14542283-14542321)
chr2 (44-82)||(18549448-18549486)
chr2 (44-82)||(37742051-37742089)
chr2 (44-82)||(37850256-37850294)
chr2 (44-82)||(42521043-42521081)
chr2 (44-82)||(44300704-44300742)
chr2 (37-125)||(6673400-6673486)
chr2 (37-73)||(3202101-3202137)
chr2 (37-96)||(3855154-3855211)
chr2 (37-73)||(7748965-7749001)
chr2 (37-73)||(33666350-33666386)
[»] scaffold0011 (2 HSPs)
scaffold0011 (37-73)||(235225-235261)
scaffold0011 (44-82)||(235619-235657)
[»] scaffold0991 (1 HSPs)
scaffold0991 (44-82)||(818-856)


Alignment Details
Target: chr1 (Bit Score: 108; Significance: 2e-54; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 45127909 - 45127685
Alignment:
Q  1 ataaaaatcaaattttgagctaannnnnnncagataaactttatataatgttctaaataagtatgtaaaaaatcattaaaaatttaa--------gcata 92  Q
    |||||||||||||||||||||||        |||||||||||||||||||||||||||||||||| |||||||||||||||||||||        |||||    
T  45127909 ataaaaatcaaattttgagctaattttttgtagataaactttatataatgttctaaataagtatgcaaaaaatcattaaaaatttaaaagtttaagcata 45127810  T
Q  93 attatacaaatattaatttcacaacaactaaaatcatgtatttaa-nnnnnnnnataagaacggaaacatatcacnnnnnnnnnacgagaaccaaaaaca 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||         ||||||||||||||||    
T  45127809 attatacaaatattaatttcacaacaactaaaatcatgtatttaatttttttttataagaacggaaacatatcactttctttttacgagaaccaaaaaca 45127710  T
Q  192 acatagggaccgaatctatttaacc 216  Q
    |||||||||||||||||||||||||    
T  45127709 acatagggaccgaatctatttaacc 45127685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 44 - 125
Target Start/End: Complemental strand, 7551329 - 7551247
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcatta-aaaatttaagcataattatacaaatattaatttcacaacaactaaaa 125  Q
    |||||| || |||| |||||||||||||||||||| ||||||||| |||||||| |||||| ||||||| ||||  |||||||    
T  7551329 tataatattttaaacaagtatgtaaaaaatcattaaaaaatttaaacataattaaacaaattttaatttaacaatgactaaaa 7551247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 87
Target Start/End: Complemental strand, 4647155 - 4647112
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaatttaa 87  Q
    ||||||||| |||| |||||||||||||||||||||||||||||    
T  4647155 tataatgttttaaacaagtatgtaaaaaatcattaaaaatttaa 4647112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 7587073 - 7587111
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  7587073 tataatgttttaaataagtatgtaaaaaatcattaaaaa 7587111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 25137074 - 25137112
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    |||||||||||||| ||||||||||||||||||||||||    
T  25137074 tataatgttctaaacaagtatgtaaaaaatcattaaaaa 25137112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 45717259 - 45717222
Alignment:
Q  36 aaactttatataatgttctaaataagtatgtaaaaaat 73  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  45717259 aaactttgtataatgttctaaataagtatgtaaaaaat 45717222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 10658743 - 10658819
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa---------tttaagcataattatacaaatattaattt 111  Q
    ||||||||| |||| ||||||||||||||||||||||||         ||||||||||||||||||||| |||||||    
T  10658743 tataatgttttaaacaagtatgtaaaaaatcattaaaaaatttaaaattttaagcataattatacaaattttaattt 10658819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 48609647 - 48609683
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaat 73  Q
    |||||| ||||||||||||||||||||||||||||||    
T  48609647 aactttgtataatgttctaaataagtatgtaaaaaat 48609683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 52711187 - 52711151
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaat 73  Q
    |||||| ||||||||||||||||||||||||||||||    
T  52711187 aactttgtataatgttctaaataagtatgtaaaaaat 52711151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 38 - 73
Target Start/End: Complemental strand, 10896048 - 10896013
Alignment:
Q  38 actttatataatgttctaaataagtatgtaaaaaat 73  Q
    ||||| ||||||||||||||||||||||||||||||    
T  10896048 actttgtataatgttctaaataagtatgtaaaaaat 10896013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 2207720 - 2207758
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  2207720 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 2207758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 4008935 - 4008973
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  4008935 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 4008973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 4057773 - 4057735
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  4057773 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 4057735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 7603691 - 7603653
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  7603691 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 7603653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 10383215 - 10383253
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  10383215 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 10383253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 14007016 - 14006978
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  14007016 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 14006978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 14410907 - 14410869
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  14410907 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 14410869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 15358467 - 15358505
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  15358467 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 15358505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 17964085 - 17964047
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  17964085 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 17964047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 26451154 - 26451116
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  26451154 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 26451116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 26507580 - 26507542
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  26507580 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 26507542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 31267089 - 31267127
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  31267089 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 31267127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 34076184 - 34076222
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  34076184 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 34076222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 35767151 - 35767189
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  35767151 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 35767189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 36449625 - 36449663
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  36449625 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 36449663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 40723623 - 40723661
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  40723623 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 40723661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 45716918 - 45716880
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  45716918 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 45716880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 47632779 - 47632817
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  47632779 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 47632817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 48723498 - 48723460
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  48723498 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 48723460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 52710846 - 52710808
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  52710846 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 52710808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 4574200 - 4574241
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaattt 85  Q
    ||||||||| |||| |||| ||||||||||||||||||||||    
T  4574200 tataatgttttaaacaagtgtgtaaaaaatcattaaaaattt 4574241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 10372886 - 10372923
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaa 81  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  10372886 tataatgttttaaacaagtatgtaaaaaatcattaaaa 10372923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 14744066 - 14744103
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaa 81  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  14744066 tataatgttttaaacaagtatgtaaaaaatcattaaaa 14744103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 28253948 - 28253907
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaattt 85  Q
    ||||||||| |||| ||||||||| |||||||||||||||||    
T  28253948 tataatgttttaaacaagtatgtataaaatcattaaaaattt 28253907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 40723282 - 40723318
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaat 73  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  40723282 aactttgtataatgttctaaataaatatgtaaaaaat 40723318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0493 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0493
Description:

Target: scaffold0493; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 6837 - 6769
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcatta-aaaatttaagcataattatacaaatattaattt 111  Q
    ||||||||| |||| |||||||||||||||||||| |||||||||||||||||| |||||| |||||||    
T  6837 tataatgttttaaacaagtatgtaaaaaatcattaaaaaatttaagcataattaaacaaattttaattt 6769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 116
Target Start/End: Original strand, 21062298 - 21062378
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaatc-attaaaaatttaagcataattatacaaatattaatttcacaa 116  Q
    |||||| |||||| |||||||||| ||||||||||||| |||||||||||| | ||||||| | ||| |||||||| ||||    
T  21062298 aactttctataatattctaaataattatgtaaaaaatctattaaaaatttaggtataattaaaaaaaaattaattttacaa 21062378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 125
Target Start/End: Original strand, 46158189 - 46158268
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaatttaagcataattatacaaatattaatttcacaacaactaaaa 125  Q
    |||||| || |||| |||||||||||||||  |||||| |||||||||||||| |||||| ||||||| |||  ||||||||    
T  46158189 tataatattttaaacaagtatgtaaaaaat--ttaaaattttaagcataattaaacaaattttaatttaacaggaactaaaa 46158268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 87
Target Start/End: Original strand, 6972432 - 6972476
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcatt-aaaaatttaa 87  Q
    ||||||||||||||||||||| |||||||||||| ||||||||||    
T  6972432 tataatgttctaaataagtatctaaaaaatcattcaaaaatttaa 6972476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 7901312 - 7901348
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaa 80  Q
    ||||||||| |||||||||||||||||||||||||||    
T  7901312 tataatgttttaaataagtatgtaaaaaatcattaaa 7901348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 41098715 - 41098679
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaat 73  Q
    |||||| ||||||||||||||||||||||||||||||    
T  41098715 aactttgtataatgttctaaataagtatgtaaaaaat 41098679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 87
Target Start/End: Complemental strand, 42989007 - 42988967
Alignment:
Q  48 atgttctaaataagtatgtaaaaaatcatt-aaaaatttaa 87  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  42989007 atgttctaaataagtatgtaaaaaatcattcaaaaatttaa 42988967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 5029337 - 5029375
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||| ||| |||||||||||||||||||||||||||||    
T  5029337 tataacgttttaaataagtatgtaaaaaatcattaaaaa 5029375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 9900664 - 9900702
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  9900664 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 9900702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 17920769 - 17920807
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  17920769 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 17920807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 23023649 - 23023687
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  23023649 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 23023687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 28642458 - 28642420
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  28642458 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 28642420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 33772511 - 33772549
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  33772511 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 33772549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 34651713 - 34651751
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  34651713 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 34651751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 36040068 - 36040106
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  36040068 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 36040106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 39035970 - 39036008
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  39035970 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 39036008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 73
Target Start/End: Complemental strand, 499046 - 499017
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaat 73  Q
    ||||||||||||||||||||||||||||||    
T  499046 tataatgttctaaataagtatgtaaaaaat 499017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 7626543 - 7626478
Alignment:
Q  33 gataaactttatataatgttctaaataagtatgtaaaaaatcatt-aaaaatttaagcataattat 97  Q
    |||||||||| |||||| || |||| |||  ||||||||||| || ||||||||||||||||||||    
T  7626543 gataaactttttataatattttaaacaagcctgtaaaaaatctttcaaaaatttaagcataattat 7626478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 36039546 - 36039497
Alignment:
Q  76 ttaaaaatttaagcataattatacaaatattaatttcacaacaactaaaa 125  Q
    |||||| |||||||||||||| |||||| ||||||| |||| ||||||||    
T  36039546 ttaaaagtttaagcataattaaacaaattttaatttaacaagaactaaaa 36039497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 27428748 - 27428712
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaat 73  Q
    |||||| ||||| ||||||||||||||||||||||||    
T  27428748 aactttgtataacgttctaaataagtatgtaaaaaat 27428712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 29738282 - 29738234
Alignment:
Q  76 ttaaaaatttaagcataattatacaaatattaatttcacaacaactaaa 124  Q
    ||||||||||||||||||||| |||||| || |||| |||| |||||||    
T  29738282 ttaaaaatttaagcataattaaacaaatttttatttaacaagaactaaa 29738234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 69
Target Start/End: Original strand, 41327558 - 41327590
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaa 69  Q
    |||||| ||||||||||||||||||||||||||    
T  41327558 aactttgtataatgttctaaataagtatgtaaa 41327590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 47463365 - 47463401
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaat 73  Q
    |||||| ||||||||||||||||||||||||| ||||    
T  47463365 aactttgtataatgttctaaataagtatgtaacaaat 47463401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 30753914 - 30753990
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa---------tttaagcataattatacaaatattaattt 111  Q
    ||||||||| |||||||||||||||||||||||||||||         |||||||||||||| ||||||||||||||    
T  30753914 tataatgttttaaataagtatgtaaaaaatcattaaaaaaattaaaattttaagcataattaaacaaatattaattt 30753990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 16894067 - 16894031
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaat 73  Q
    |||||| ||||||||||||||||||||||||||||||    
T  16894067 aactttgtataatgttctaaataagtatgtaaaaaat 16894031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 945982 - 946020
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  945982 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 946020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 13400248 - 13400210
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  13400248 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 13400210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 15053878 - 15053840
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  15053878 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 15053840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 19693278 - 19693316
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  19693278 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 19693316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 20510146 - 20510184
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  20510146 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 20510184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 22007284 - 22007322
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  22007284 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 22007322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 2857424 - 2857379
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    |||||| |||||| || |||| ||||||||||||||||||||||||    
T  2857424 aactttttataatattttaaacaagtatgtaaaaaatcattaaaaa 2857379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 53328647 - 53328712
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaatttaagcataattatacaaatattaattt 111  Q
    ||||||||| |||| |||||||||||||||  |||||| |||||||||||||| |||||| |||||||    
T  53328647 tataatgttttaaacaagtatgtaaaaaat--ttaaaattttaagcataattaaacaaattttaattt 53328712  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 73
Target Start/End: Original strand, 25578184 - 25578221
Alignment:
Q  36 aaactttatataatgttctaaataagtatgtaaaaaat 73  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  25578184 aaactttgtataatgttctaaataagtatgtaaaaaat 25578221  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 30786551 - 30786506
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    |||||| ||||||||| |||| ||||||||||||||||||||||||    
T  30786551 aactttttataatgttttaaacaagtatgtaaaaaatcattaaaaa 30786506  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 37127007 - 37127048
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaattt 85  Q
    ||||||||| |||| |||||||||||||||||||||||||||    
T  37127007 tataatgttttaaacaagtatgtaaaaaatcattaaaaattt 37127048  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 42367880 - 42367921
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaattt 85  Q
    ||||||||| |||| |||||||||||||||||||||||||||    
T  42367880 tataatgttttaaacaagtatgtaaaaaatcattaaaaattt 42367921  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 19878181 - 19878217
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaat 73  Q
    ||||||||||||||||||||||||||| |||||||||    
T  19878181 aactttatataatgttctaaataagtacgtaaaaaat 19878217  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 30778726 - 30778661
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaatttaagcataattatacaaatattaattt 111  Q
    ||||||||| |||| |||||| ||||||||  |||||| |||||||||||||| |||||| |||||||    
T  30778726 tataatgttttaaacaagtatataaaaaat--ttaaaattttaagcataattaaacaaattttaattt 30778661  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 40126858 - 40126793
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaatttaagcataattatacaaatattaattt 111  Q
    ||||||||| |||| |||||||||||||||  |||||| |||||||||||||| | ||| ||||||||    
T  40126858 tataatgttttaaacaagtatgtaaaaaat--ttaaaattttaagcataattaaaaaaaaattaattt 40126793  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 111
Target Start/End: Original strand, 45454469 - 45454534
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaatttaagcataattatacaaatattaattt 111  Q
    ||||||||| |||| |||||||||||||||  |||||| ||||| |||||||| |||||| |||||||    
T  45454469 tataatgttttaaacaagtatgtaaaaaat--ttaaaattttaaacataattaaacaaattttaattt 45454534  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 41642465 - 41642418
Alignment:
Q  36 aaactttatataatgttctaaataagtatgtaaaaaatcattaaaaat 83  Q
    |||||||||||||| || ||||||| |||||||||||||||| |||||    
T  41642465 aaactttatataatattttaaataaatatgtaaaaaatcattcaaaat 41642418  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 1486921 - 1486883
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  1486921 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 1486883  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 4735906 - 4735944
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  4735906 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 4735944  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 8339797 - 8339835
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  8339797 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 8339835  T

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Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 10182200 - 10182162
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  10182200 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 10182162  T

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Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 15490729 - 15490691
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  15490729 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 15490691  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 16644756 - 16644794
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  16644756 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 16644794  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 23878733 - 23878771
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  23878733 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 23878771  T

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Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 24342800 - 24342838
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  24342800 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 24342838  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 28055226 - 28055188
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  28055226 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 28055188  T

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Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 28065651 - 28065613
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  28065651 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 28065613  T

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Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 29167000 - 29167038
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  29167000 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 29167038  T

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Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 31269719 - 31269757
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  31269719 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 31269757  T

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Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 33391160 - 33391198
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  33391160 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 33391198  T

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Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 34225999 - 34225961
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  34225999 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 34225961  T

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Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 36778001 - 36778039
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  36778001 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 36778039  T

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Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 111
Target Start/End: Original strand, 41642559 - 41642605
Alignment:
Q  66 taaaaaatcatt-aaaaatttaagcataattatacaaatattaattt 111  Q
    |||||||||||| ||||||||||||||||||| |||||| |||||||    
T  41642559 taaaaaatcattcaaaaatttaagcataattaaacaaattttaattt 41642605  T

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Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 43127655 - 43127617
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  43127655 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 43127617  T

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Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 43729897 - 43729958
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa--tttaagcataattatacaaat 103  Q
    ||||||||| |||| || |||||||||||||||||||||  ||||| |||||||| ||||||    
T  43729897 tataatgttttaaacaaatatgtaaaaaatcattaaaaaattttaaacataattaaacaaat 43729958  T

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Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 50362525 - 50362563
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  50362525 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 50362563  T

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Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 53629123 - 53629161
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  53629123 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 53629161  T

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Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 55006125 - 55006087
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  55006125 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 55006087  T

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Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 25578519 - 25578564
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    |||||| |||||| || |||| ||||||||||||||||||||||||    
T  25578519 aactttttataatattttaaacaagtatgtaaaaaatcattaaaaa 25578564  T

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Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 81
Target Start/End: Original strand, 43660544 - 43660581
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaa 81  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  43660544 tataatgttttaaataagtacgtaaaaaatcattaaaa 43660581  T

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Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 49612415 - 49612452
Alignment:
Q  48 atgttctaaataagtatgtaaaaaatcattaaaaattt 85  Q
    ||||| |||| |||||||||||||||||||||||||||    
T  49612415 atgttttaaacaagtatgtaaaaaatcattaaaaattt 49612452  T

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Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 16787280 - 16787316
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaat 73  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  16787280 aactttgtataatgttctaaataattatgtaaaaaat 16787316  T

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Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 23251976 - 23251940
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaat 73  Q
    |||||| ||||||||||||||||| ||||||||||||    
T  23251976 aactttgtataatgttctaaataaatatgtaaaaaat 23251940  T

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Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 30664224 - 30664260
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaa 80  Q
    ||||||||| |||| ||||||||||||||||||||||    
T  30664224 tataatgttttaaacaagtatgtaaaaaatcattaaa 30664260  T

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Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 42367539 - 42367575
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaat 73  Q
    |||||| |||||| |||||||||||||||||||||||    
T  42367539 aactttgtataatattctaaataagtatgtaaaaaat 42367575  T

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Target: scaffold0029 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 87
Target Start/End: Complemental strand, 42015 - 41972
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaatttaa 87  Q
    ||||||||| |||| |||||||||||||||||||||||||||||    
T  42015 tataatgttttaaacaagtatgtaaaaaatcattaaaaatttaa 41972  T

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Target: scaffold0029; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 87
Target Start/End: Complemental strand, 48133 - 48090
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaatttaa 87  Q
    ||||||||| |||| |||||||||||||||||||||||||||||    
T  48133 tataatgttttaaacaagtatgtaaaaaatcattaaaaatttaa 48090  T

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Target: scaffold0029; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 87
Target Start/End: Complemental strand, 16968 - 16925
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaatttaa 87  Q
    ||||||||| |||| |||||||||||||||||| ||||||||||    
T  16968 tataatgttttaaacaagtatgtaaaaaatcataaaaaatttaa 16925  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 1048384 - 1048435
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcatt-aaaaatttaagcataat 94  Q
    |||||| ||||||||||||||||||||||||||| |||||||||| ||||||    
T  1048384 tataatattctaaataagtatgtaaaaaatcattcaaaaatttaaacataat 1048435  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 87
Target Start/End: Original strand, 44090616 - 44090659
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaatttaa 87  Q
    ||||||||| |||| |||||||||||||||||||||||||||||    
T  44090616 tataatgttttaaacaagtatgtaaaaaatcattaaaaatttaa 44090659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 27923690 - 27923652
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  27923690 tataatgttttaaataagtatgtaaaaaatcattaaaaa 27923652  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 35209676 - 35209721
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    |||||| ||||||||| |||| ||||||||||||||||||||||||    
T  35209676 aactttttataatgttttaaacaagtatgtaaaaaatcattaaaaa 35209721  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 30611245 - 30611281
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaat 73  Q
    |||||| ||||||||||||||||||||||||||||||    
T  30611245 aactttgtataatgttctaaataagtatgtaaaaaat 30611281  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 45421769 - 45421733
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaat 73  Q
    |||||| ||||||||||||||||||||||||||||||    
T  45421769 aactttgtataatgttctaaataagtatgtaaaaaat 45421733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 125
Target Start/End: Complemental strand, 27924016 - 27923924
Alignment:
Q  31 cagataaactttatataatgttctaaataagtatgtaaaaaatcattaaaaatttaagcataattatacaaatattaatttcacaacaactaaaa 125  Q
    |||| ||||||| |||||||||| |||||||||||||||||||  |||||| |||||| | |||||  ||||| |||| || ||||  |||||||    
T  27924016 cagagaaactttgtataatgttcaaaataagtatgtaaaaaat--ttaaaagtttaagtacaattaagcaaattttaaatttacaaggactaaaa 27923924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 7637178 - 7637216
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  7637178 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 7637216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 8076302 - 8076264
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  8076302 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 8076264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 11385540 - 11385502
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  11385540 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 11385502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 13082839 - 13082801
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  13082839 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 13082801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 13699479 - 13699441
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  13699479 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 13699441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 17918934 - 17918972
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  17918934 tataatgttgtaaacaagtatgtaaaaaatcattaaaaa 17918972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 24541977 - 24542015
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  24541977 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 24542015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 27519643 - 27519605
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  27519643 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 27519605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 28174373 - 28174411
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  28174373 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 28174411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 30378164 - 30378126
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  30378164 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 30378126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 34058732 - 34058694
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  34058732 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 34058694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 39106991 - 39107029
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  39106991 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 39107029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 41219640 - 41219602
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  41219640 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 41219602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 41724854 - 41724816
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  41724854 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 41724816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 45239915 - 45239830
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaatcattaaaaatttaagcataattatacaaatattaatttcacaacaactaaaa 125  Q
    |||||| |||||||||||||| |||||||||||||    |||||| |||||| | ||||| |||||| ||||||| ||||  |||||||    
T  45239915 aactttgtataatgttctaaacaagtatgtaaaaa---tttaaaagtttaagtacaattaaacaaattttaattttacaaggactaaaa 45239830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 76 - 125
Target Start/End: Complemental strand, 36610829 - 36610780
Alignment:
Q  76 ttaaaaatttaagcataattatacaaatattaatttcacaacaactaaaa 125  Q
    |||||| |||||||||||||| |||||| ||||||| |||| ||||||||    
T  36610829 ttaaaagtttaagcataattaaacaaattttaatttaacaagaactaaaa 36610780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 43470528 - 43470487
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaattt 85  Q
    |||||| || |||| |||||||||||||||||||||||||||    
T  43470528 tataatattttaaacaagtatgtaaaaaatcattaaaaattt 43470487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 1776765 - 1776803
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  1776765 tataatgttttaaataagtatgtaaaaaatcattaaaaa 1776803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 23709005 - 23709043
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  23709005 tataatgttttaaataagtatgtaaaaaatcattaaaaa 23709043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 39269732 - 39269694
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  39269732 tataatgttttaaataagtatgtaaaaaatcattaaaaa 39269694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 42931279 - 42931324
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    |||||| ||||||||| |||| ||||||||||||||||||||||||    
T  42931279 aactttttataatgttttaaacaagtatgtaaaaaatcattaaaaa 42931324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 10386488 - 10386524
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaat 73  Q
    |||||| ||||||||||||||||||||||||||||||    
T  10386488 aactttgtataatgttctaaataagtatgtaaaaaat 10386524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 39789207 - 39789171
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaat 73  Q
    |||||| ||||||||||||||||||||||||||||||    
T  39789207 aactttgtataatgttctaaataagtatgtaaaaaat 39789171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 41172940 - 41172984
Alignment:
Q  33 gataaactttatataatgttctaaataagtatgtaaaaaatcatt 77  Q
    |||||||||| ||||||||| |||||||||| |||||||||||||    
T  41172940 gataaactttgtataatgttataaataagtaggtaaaaaatcatt 41172984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 87
Target Start/End: Original strand, 29247029 - 29247072
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaatttaa 87  Q
    ||||||||| |||| |||||||||||||||||||||||| ||||    
T  29247029 tataatgttttaaacaagtatgtaaaaaatcattaaaaaattaa 29247072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 343891 - 343853
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  343891 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 343853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 4553346 - 4553308
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  4553346 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 4553308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 6203143 - 6203105
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  6203143 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 6203105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 6488498 - 6488460
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  6488498 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 6488460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 8949595 - 8949557
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  8949595 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 8949557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 9428041 - 9428003
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  9428041 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 9428003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 16618980 - 16619018
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  16618980 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 16619018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 18092690 - 18092652
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  18092690 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 18092652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 22515635 - 22515597
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  22515635 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 22515597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 23064039 - 23064001
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  23064039 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 23064001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 24282001 - 24282039
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  24282001 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 24282039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 25768150 - 25768188
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  25768150 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 25768188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 28706428 - 28706394
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaa 71  Q
    |||||| ||||||||||||||||||||||||||||    
T  28706428 aactttgtataatgttctaaataagtatgtaaaaa 28706394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 31312119 - 31312081
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  31312119 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 31312081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 35627174 - 35627136
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  35627174 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 35627136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 39788865 - 39788827
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  39788865 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 39788827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 47016374 - 47016412
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  47016374 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 47016412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 52224517 - 52224479
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  52224517 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 52224479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 52823485 - 52823523
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  52823485 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 52823523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 81
Target Start/End: Complemental strand, 34756893 - 34756856
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaa 81  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  34756893 tataatgttttaaacaagtatgtaaaaaatcattaaaa 34756856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 52788980 - 52789025
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    |||||| ||||||||| |||| |||||||||| |||||||||||||    
T  52788980 aactttttataatgttttaaacaagtatgtaataaatcattaaaaa 52789025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 45 - 73
Target Start/End: Original strand, 11996851 - 11996879
Alignment:
Q  45 ataatgttctaaataagtatgtaaaaaat 73  Q
    |||||||||||||||||||||||||||||    
T  11996851 ataatgttctaaataagtatgtaaaaaat 11996879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 82
Target Start/End: Original strand, 47876057 - 47876101
Alignment:
Q  38 actttatataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||| |||||| || |||| ||||||||||||||||||||||||    
T  47876057 actttttataatattttaaacaagtatgtaaaaaatcattaaaaa 47876101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 2567546 - 2567587
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaattt 85  Q
    ||||||||| |||| |||||||||||||||||||||||||||    
T  2567546 tataatgttttaaacaagtatgtaaaaaatcattaaaaattt 2567587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 796195 - 796159
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaat 73  Q
    |||||| ||||||||||||||||||||||||||||||    
T  796195 aactttgtataatgttctaaataagtatgtaaaaaat 796159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 8980318 - 8980282
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaat 73  Q
    |||||| ||||||||||||||||||||||||||||||    
T  8980318 aactttgtataatgttctaaataagtatgtaaaaaat 8980282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 18404680 - 18404644
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaat 73  Q
    |||||| ||||||||||||||||||||||||||||||    
T  18404680 aactttgtataatgttctaaataagtatgtaaaaaat 18404644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 22671292 - 22671256
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaat 73  Q
    |||||| ||||||||||||||||||||||||||||||    
T  22671292 aactttgtataatgttctaaataagtatgtaaaaaat 22671256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 25001178 - 25001142
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaat 73  Q
    |||||| ||||||||||||||||||||||||||||||    
T  25001178 aactttgtataatgttctaaataagtatgtaaaaaat 25001142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 32299551 - 32299587
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaat 73  Q
    |||||| ||||||||||||||||||||||||||||||    
T  32299551 aactttgtataatgttctaaataagtatgtaaaaaat 32299587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 5597868 - 5597906
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  5597868 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 5597906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 6450111 - 6450073
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  6450111 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 6450073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 7573114 - 7573152
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  7573114 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 7573152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 8979979 - 8979941
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  8979979 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 8979941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 19928653 - 19928691
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  19928653 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 19928691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 20453003 - 20452965
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  20453003 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 20452965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 22981958 - 22981920
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  22981958 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 22981920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 24333985 - 24333947
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  24333985 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 24333947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 25000840 - 25000802
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  25000840 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 25000802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 27189040 - 27189002
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  27189040 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 27189002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 27432590 - 27432628
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  27432590 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 27432628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 32299883 - 32299921
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  32299883 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 32299921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 34818887 - 34818849
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  34818887 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 34818849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 38983375 - 38983337
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  38983375 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 38983337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 41906832 - 41906794
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  41906832 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 41906794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 44 - 73
Target Start/End: Complemental strand, 9265416 - 9265387
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaat 73  Q
    ||||||||||||||||||||||||||||||    
T  9265416 tataatgttctaaataagtatgtaaaaaat 9265387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 9125582 - 9125542
Alignment:
Q  31 cagataaactttatataatgttctaaataagtatgtaaaaa 71  Q
    |||| ||||||| |||||| |||||||||||||||||||||    
T  9125582 cagagaaactttgtataattttctaaataagtatgtaaaaa 9125542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 36816706 - 36816670
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaat 73  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  36816706 aactttgtataatgttctaactaagtatgtaaaaaat 36816670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 25553581 - 25553536
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    |||||| ||||||||| |||| ||||||||||||||||||||||||    
T  25553581 aactttttataatgttttaaacaagtatgtaaaaaatcattaaaaa 25553536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 125
Target Start/End: Complemental strand, 39670705 - 39670616
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaatcatt-aaaaatttaagcataattatacaaatattaatttcacaacaactaaaa 125  Q
    |||||| ||||||||||||||||||||||| ||||||  || |||| |||||||| | |||  ||||| ||||||||||||  |||||||    
T  39670705 aactttgtataatgttctaaataagtatgtgaaaaatatttgaaaagtttaagcacagttaagcaaattttaatttcacaaggactaaaa 39670616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 7401971 - 7401935
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaat 73  Q
    |||||| ||||||||||||||||||||||||||||||    
T  7401971 aactttgtataatgttctaaataagtatgtaaaaaat 7401935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 42520702 - 42520738
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaat 73  Q
    |||||| ||||||||||||||||||||||||||||||    
T  42520702 aactttgtataatgttctaaataagtatgtaaaaaat 42520738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 72
Target Start/End: Complemental strand, 6206152 - 6206117
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaa 72  Q
    |||||| |||||||||||||||||||||||||||||    
T  6206152 aactttgtataatgttctaaataagtatgtaaaaaa 6206117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 82
Target Start/End: Original strand, 10214937 - 10214980
Alignment:
Q  39 ctttatataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    |||| ||||||||| |||| ||||||||||||||||||||||||    
T  10214937 ctttttataatgttttaaacaagtatgtaaaaaatcattaaaaa 10214980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 87
Target Start/End: Complemental strand, 12620310 - 12620267
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaatttaa 87  Q
    ||||||||| |||| |||||||| ||||||||||||||||||||    
T  12620310 tataatgttttaaacaagtatgtgaaaaatcattaaaaatttaa 12620267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 91
Target Start/End: Original strand, 39362904 - 39362951
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaatttaagcat 91  Q
    ||||||||||| || | || ||||||||||||||||||||||||||||    
T  39362904 tataatgttcttaacatgtttgtaaaaaatcattaaaaatttaagcat 39362951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 5363731 - 5363769
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||||||||||||||||||| ||||||||    
T  5363731 tataatgttttaaataagtatgtaaaaaattattaaaaa 5363769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 13803262 - 13803224
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  13803262 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 13803224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 14542283 - 14542321
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  14542283 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 14542321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 18549486 - 18549448
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  18549486 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 18549448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 37742051 - 37742089
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  37742051 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 37742089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 37850294 - 37850256
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  37850294 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 37850256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 42521043 - 42521081
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  42521043 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 42521081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 44300704 - 44300742
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  44300704 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 44300742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 6673400 - 6673486
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaatcattaaaaatttaagcataattatacaaatattaatttcacaacaactaaaa 125  Q
    |||||| | |||||||||||| |||||||||||||||  |||||| |||||| | |||||  ||||| ||||||| ||||  |||||||    
T  6673400 aactttgtctaatgttctaaacaagtatgtaaaaaat--ttaaaagtttaagtacaattaagcaaattttaattttacaaggactaaaa 6673486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 3202137 - 3202101
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaat 73  Q
    |||||| |||||| |||||||||||||||||||||||    
T  3202137 aactttgtataatattctaaataagtatgtaaaaaat 3202101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 96
Target Start/End: Complemental strand, 3855211 - 3855154
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaatcattaaaaatttaagcataatta 96  Q
    |||||| ||||||||||||||||| ||||| ||||||  |||||| || |||||||||||    
T  3855211 aactttgtataatgttctaaataaatatgttaaaaat--ttaaaagttgaagcataatta 3855154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Complemental strand, 7749001 - 7748965
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaat 73  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  7749001 aactttgtataatgttctaattaagtatgtaaaaaat 7748965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 33666350 - 33666386
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaat 73  Q
    |||||| | ||||||||||||||||||||||||||||    
T  33666350 aactttgtgtaatgttctaaataagtatgtaaaaaat 33666386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 73
Target Start/End: Original strand, 235225 - 235261
Alignment:
Q  37 aactttatataatgttctaaataagtatgtaaaaaat 73  Q
    ||||||||||||||||||||| |||||||||||||||    
T  235225 aactttatataatgttctaaacaagtatgtaaaaaat 235261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 235619 - 235657
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  235619 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 235657  T

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Target: scaffold0991 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0991
Description:

Target: scaffold0991; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Complemental strand, 856 - 818
Alignment:
Q  44 tataatgttctaaataagtatgtaaaaaatcattaaaaa 82  Q
    ||||||||| |||| ||||||||||||||||||||||||    
T  856 tataatgttttaaacaagtatgtaaaaaatcattaaaaa 818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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