View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19996_low_5 (Length: 462)

Name: NF19996_low_5
Description: NF19996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19996_low_5
NF19996_low_5
[»] chr3 (16 HSPs)
chr3 (121-453)||(5004640-5004972)
chr3 (123-407)||(46404537-46404813)
chr3 (123-319)||(16975253-16975450)
chr3 (123-401)||(11967862-11968129)
chr3 (122-226)||(16475277-16475381)
chr3 (346-453)||(16975453-16975569)
chr3 (34-133)||(52641477-52641575)
chr3 (34-80)||(29451492-29451538)
chr3 (121-210)||(9104172-9104261)
chr3 (134-227)||(17542813-17542904)
chr3 (417-453)||(46404508-46404544)
chr3 (402-453)||(11937787-11937838)
chr3 (105-165)||(7337291-7337351)
chr3 (80-130)||(29453601-29453651)
chr3 (238-290)||(8730913-8730966)
chr3 (238-290)||(9082800-9082853)
[»] chr6 (11 HSPs)
chr6 (123-453)||(23260490-23260828)
chr6 (122-407)||(25005143-25005429)
chr6 (121-453)||(32450174-32450514)
chr6 (124-407)||(34636188-34636457)
chr6 (296-453)||(10751480-10751637)
chr6 (124-223)||(26182602-26182700)
chr6 (121-198)||(11166587-11166664)
chr6 (105-227)||(13777247-13777367)
chr6 (124-288)||(24992418-24992578)
chr6 (123-175)||(10751623-10751675)
chr6 (417-453)||(34636450-34636486)
[»] scaffold0413 (2 HSPs)
scaffold0413 (123-407)||(8840-9125)
scaffold0413 (417-453)||(9118-9154)
[»] chr1 (12 HSPs)
chr1 (123-453)||(35761961-35762302)
chr1 (280-453)||(37667098-37667271)
chr1 (125-352)||(9537377-9537602)
chr1 (130-258)||(37667265-37667393)
chr1 (121-290)||(16074708-16074879)
chr1 (34-136)||(24304488-24304590)
chr1 (105-245)||(21264718-21264858)
chr1 (124-227)||(6835953-6836056)
chr1 (123-199)||(338060-338135)
chr1 (116-210)||(8421567-8421660)
chr1 (122-198)||(24275569-24275645)
chr1 (123-165)||(43407964-43408006)
[»] chr7 (12 HSPs)
chr7 (124-407)||(15873911-15874186)
chr7 (132-453)||(21491405-21491739)
chr7 (123-352)||(22077633-22077860)
chr7 (123-453)||(18367239-18367576)
chr7 (122-333)||(48576331-48576540)
chr7 (122-259)||(9993290-9993427)
chr7 (123-264)||(48654339-48654478)
chr7 (120-210)||(12196729-12196819)
chr7 (417-453)||(15873882-15873918)
chr7 (119-164)||(11036685-11036730)
chr7 (105-165)||(10289388-10289448)
chr7 (122-160)||(7503908-7503946)
[»] chr5 (6 HSPs)
chr5 (204-407)||(536895-537090)
chr5 (124-284)||(536731-536891)
chr5 (123-451)||(4557883-4558222)
chr5 (35-210)||(6308536-6308710)
chr5 (122-210)||(27026620-27026708)
chr5 (417-453)||(537083-537119)
[»] chr4 (4 HSPs)
chr4 (156-453)||(49499045-49499351)
chr4 (122-352)||(28969204-28969432)
chr4 (119-209)||(41868566-41868655)
chr4 (123-210)||(40458906-40458992)
[»] chr2 (9 HSPs)
chr2 (123-274)||(32735391-32735542)
chr2 (122-227)||(12774954-12775057)
chr2 (123-290)||(1193599-1193765)
chr2 (122-227)||(28267692-28267794)
chr2 (190-316)||(29270702-29270827)
chr2 (123-199)||(40447433-40447508)
chr2 (122-198)||(23828298-23828374)
chr2 (121-210)||(18292882-18292970)
chr2 (139-227)||(44788531-44788617)
[»] scaffold1838 (1 HSPs)
scaffold1838 (168-346)||(221-397)
[»] scaffold0120 (1 HSPs)
scaffold0120 (119-198)||(2645-2724)
[»] chr8 (5 HSPs)
chr8 (105-227)||(22816487-22816607)
chr8 (125-210)||(40841568-40841652)
chr8 (190-290)||(35839168-35839268)
chr8 (123-198)||(20264999-20265074)
chr8 (123-198)||(21051628-21051703)
[»] scaffold0013 (1 HSPs)
scaffold0013 (101-227)||(243170-243296)
[»] scaffold0002 (1 HSPs)
scaffold0002 (122-198)||(356884-356960)
[»] scaffold0069 (1 HSPs)
scaffold0069 (122-158)||(10884-10920)


Alignment Details
Target: chr3 (Bit Score: 305; Significance: 1e-171; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 121 - 453
Target Start/End: Complemental strand, 5004972 - 5004640
Alignment:
Q  121 caaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaact 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5004972 caaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtcttttgaaaagaacaaaacaact 5004873  T
Q  221 aaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtttgtatgaaaatgttatgtggaatgaca 320  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  5004872 aaaatatgaatttatatggtgaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatgaca 5004773  T
Q  321 tttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatgagttttaagaaa 420  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  5004772 tttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatacgagttttacgaaa 5004673  T
Q  421 atatttcagtttggtccatgtggatgatgatgt 453  Q
    |||||||||||||||||||||||||||||||||    
T  5004672 atatttcagtttggtccatgtggatgatgatgt 5004640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 123 - 407
Target Start/End: Complemental strand, 46404813 - 46404537
Alignment:
Q  123 aggtaagggcttttt-ccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 221  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46404813 aggtaagggcttttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 46404714  T
Q  222 aaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtttgtatgaaaatgttatgtggaatgacat 321  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||| ||||||||| |      
T  46404713 aaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatatctgtatgataatgttttgtggaatggc-- 46404616  T
Q  322 ttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatat 407  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46404615 -------atttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatat 46404537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 123 - 319
Target Start/End: Original strand, 16975253 - 16975450
Alignment:
Q  123 aggtaagggctttttcccc-atacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 221  Q
    |||||||||||||| |||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  16975253 aggtaagggcttttccccccatacattcttaataagtactaggattatgttatgaattagaggtagagattcttgtttgttgaaaagaacaaaacaacta 16975352  T
Q  222 aaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtttgtatgaaaatgttatgtggaatgac 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||    
T  16975353 aaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataattttatgtggaatgac 16975450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 123 - 401
Target Start/End: Complemental strand, 11968129 - 11967862
Alignment:
Q  123 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaa--caaaacaact 220  Q
    ||||||||| |||||||| |||||| | |||||||||||||||| |||||||||      |||||||||||||      |||||||||  ||||| | ||    
T  11968129 aggtaagggttttttccc-atacgtccatactaagtactaggatgatgttatga------ggtagagattctt------tgaaaagaagacaaaaaatct 11968043  T
Q  221 aaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtttgtatgaaaatgttatgtggaatgaca 320  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||  || ||||||||    
T  11968042 aaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaattatattttatacgatgtgtgtat-aaaatgttccgtagaatgaca 11967944  T
Q  321 tttattttatttttctattcatatatg--tttttgtggtatt-gtaaagaagtgttagactttgctgataaactaaataaatga 401  Q
    |||||||||||||  ||| ||||||||  ||||||||||||| | |||||||||||  | |||| |||||||||||| ||||||    
T  11967943 tttattttattttgatatgcatatatgtttttttgtggtattgggaaagaagtgtt--attttgttgataaactaaagaaatga 11967862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 122 - 226
Target Start/End: Original strand, 16475277 - 16475381
Alignment:
Q  122 aaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 221  Q
    |||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16475277 aaggtaagagttttttccccatacgttcttactaagtactaagattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 16475376  T
Q  222 aaata 226  Q
    |||||    
T  16475377 aaata 16475381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 346 - 453
Target Start/End: Original strand, 16975453 - 16975569
Alignment:
Q  346 tgtttttgtggtattgt-aaagaagtgttagactttgctgataaactaaataaatga--------aaatatgagttttaagaaaatatttcagtttggtc 436  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||        |||||||||||||| |||||||||||||||||||     
T  16975453 tgtttttgtggtattgttaaagaagtgttagactttgctgataaactaaataaatgaaaatatagaaatatgagttttatgaaaatatttcagtttggtt 16975552  T
Q  437 catgtggatgatgatgt 453  Q
    |||||||||||||||||    
T  16975553 catgtggatgatgatgt 16975569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 34 - 133
Target Start/End: Complemental strand, 52641575 - 52641477
Alignment:
Q  34 aagctccgagtccaaatccctttgcgaattttcttgtggatctttagagtctatgctagatttcatacgattaggaagggaggctcacaaggtaagggct 133  Q
    ||||||||||||||||| ||||||| ||||||||||||||||  |||||||||||||| |||| |||||||||||||| || ||| | ||||||||||||    
T  52641575 aagctccgagtccaaattcctttgcaaattttcttgtggatc-ctagagtctatgctatattttatacgattaggaagcgaagcttataaggtaagggct 52641477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 34 - 80
Target Start/End: Original strand, 29451492 - 29451538
Alignment:
Q  34 aagctccgagtccaaatccctttgcgaattttcttgtggatctttag 80  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
T  29451492 aagccccgagtccaaatccctttgcgaattttcttgtggatctttag 29451538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 121 - 210
Target Start/End: Original strand, 9104172 - 9104261
Alignment:
Q  121 caaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaa 210  Q
    ||||||||||| |||||||||||||||| |||||||||  ||||| | |||||| || ||| |||||  |||||||||| ||||||||||    
T  9104172 caaggtaagggttttttccccatacgtttttactaagtgttaggactgtgttattaaatagtggtagcaattcttgtcttttgaaaagaa 9104261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 134 - 227
Target Start/End: Complemental strand, 17542904 - 17542813
Alignment:
Q  134 ttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatat 227  Q
    |||||||||||||||||||||||||  ||||| | |||||| || ||| |||||  |||||||||| |||||||||  ||||||| ||||||||    
T  17542904 ttttccccatacgttcttactaagttttaggactgtgttattaaatagtggtagcaattcttgtctcttgaaaaga--aaaacaattaaaatat 17542813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 453
Target Start/End: Complemental strand, 46404544 - 46404508
Alignment:
Q  417 gaaaatatttcagtttggtccatgtggatgatgatgt 453  Q
    |||||||||||||||||||||||||||||||||||||    
T  46404544 gaaaatatttcagtttggtccatgtggatgatgatgt 46404508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 402 - 453
Target Start/End: Complemental strand, 11937838 - 11937787
Alignment:
Q  402 aaatatgagttttaagaaaatatttcagtttggtccatgtggatgatgatgt 453  Q
    |||||||||||||| |||||||||| | |||||| |||||||||||||||||    
T  11937838 aaatatgagttttatgaaaatattttattttggttcatgtggatgatgatgt 11937787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 165
Target Start/End: Complemental strand, 7337351 - 7337291
Alignment:
Q  105 taggaagggaggctcacaaggtaagggctttttccccatacgttcttactaagtactagga 165  Q
    |||||||| | ||| || ||||||||||||||||||||||||| | |||||||| ||||||    
T  7337351 taggaaggaaagcttacgaggtaagggctttttccccatacgtccatactaagtgctagga 7337291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 29453601 - 29453651
Alignment:
Q  80 gagtctatgctagatttcatacgattaggaagggaggctcacaaggtaagg 130  Q
    ||||||||||||||||| ||| ||||||||| ||| ||| |||||||||||    
T  29453601 gagtctatgctagattttatatgattaggaatggaagcttacaaggtaagg 29453651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 8730913 - 8730966
Alignment:
Q  238 ggtaaaatttaaccttttataaaagttattagtt-taattatattttatatgat 290  Q
    |||||||||||| |||||||||||||||||| || | ||||| |||||||||||    
T  8730913 ggtaaaatttaatcttttataaaagttattaattctcattatgttttatatgat 8730966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 9082800 - 9082853
Alignment:
Q  238 ggtaaaatttaaccttttataaaagttattagtt-taattatattttatatgat 290  Q
    |||||||||||| |||||||||||||||||| || | ||||| |||||||||||    
T  9082800 ggtaaaatttaatcttttataaaagttattaattctcattatgttttatatgat 9082853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 271; Significance: 1e-151; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 123 - 453
Target Start/End: Complemental strand, 23260828 - 23260490
Alignment:
Q  123 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaa 222  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  23260828 aggtaagggctttttccccatacgttcttactaagtattaggattatgttatgaattagaggtagagattcttgtctcttgaaaagaacaaaacaactaa 23260729  T
Q  223 aatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtttgtatgaaaatgttatgtggaatgacatt 322  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  23260728 aatatgaattcatatggtaaaatttagccttttataaaagttattagtttaattatattttatatgatgtttgtatgataatgttatgtggaatgacatt 23260629  T
Q  323 tattttatttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatga--------aaatatgagttt 413  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||        ||||||||||||    
T  23260628 tattttatttttctattcatatatgtttttgtggtattgttaaagaagtgttaga-tttgctgataaactaaataaatgaaaatatagaaatatgagttt 23260530  T
Q  414 taagaaaatatttcagtttggtccatgtggatgatgatgt 453  Q
    || ||||||||||||||||||| |||||||||||||||||    
T  23260529 tatgaaaatatttcagtttggttcatgtggatgatgatgt 23260490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 122 - 407
Target Start/End: Original strand, 25005143 - 25005429
Alignment:
Q  122 aaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 221  Q
    |||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25005143 aaggtaagagttttttccccatacgttcttactaagtactaagattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 25005242  T
Q  222 aaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtttgtatgaaaatgttatgtggaatgacat 321  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||    
T  25005243 aaataagaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataattttatgtggaatgacat 25005342  T
Q  322 ttattttatttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatgaaaatat 407  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  25005343 ttattttatttttctattcatatatgtttttgtggtattgttaaagaagtgttagactttgctgataaactaaataaatgaaaatat 25005429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 121 - 453
Target Start/End: Complemental strand, 32450514 - 32450174
Alignment:
Q  121 caaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaact 220  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32450514 caaggtaagggctttt-ccccgtacgttcttactaagtactaggattgtgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaact 32450416  T
Q  221 aaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtttgtatgaaaatgttatgtggaatgaca 320  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  32450415 aaaatatgaattcatatggtaaattttaactttttataaaagttattagtttaattatattttatatgatgtgtgtatgataatgttatgtggaatgaca 32450316  T
Q  321 tttattttatttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatga--------aaatatgagt 411  Q
    |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||        ||||||||||    
T  32450315 tttattttatttttctatgcatatatgtttttgtggtattgttaaagaagtgttagactttgttgataaactaaataaatgaaaatatagaaatatgagt 32450216  T
Q  412 tttaagaaaatatttcagtttggtccatgtggatgatgatgt 453  Q
    |||| |||||||||||| |||||| |||||| ||||||||||    
T  32450215 tttatgaaaatatttcattttggttcatgtgcatgatgatgt 32450174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 124 - 407
Target Start/End: Original strand, 34636188 - 34636457
Alignment:
Q  124 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34636188 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 34636287  T
Q  224 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtttgtatgaaaatgttatgtggaatgacattt 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||      
T  34636288 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggcatgacat-- 34636385  T
Q  324 attttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatat 407  Q
          |||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||    
T  34636386 ------tttttctattcatatatgtttttgtggtatt------aagtgttagactttgctgataaactaaataaatgaaaatat 34636457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 296 - 453
Target Start/End: Complemental strand, 10751637 - 10751480
Alignment:
Q  296 tatgaaaatgttatgtggaatgacatttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaat 395  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10751637 tatgataatgttatgtggaatgacatttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaat 10751538  T
Q  396 aaatgaaaatatgagttttaagaaaatatttcagtttggtccatgtggatgatgatgt 453  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||    
T  10751537 aaatgaaaatacgagttttacgaaaatatttcagtttggtccatgtggatgatgatgt 10751480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 124 - 223
Target Start/End: Complemental strand, 26182700 - 26182602
Alignment:
Q  124 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 223  Q
    ||||||||||||||||||||| || | ||||||||| |||||| |||||||||||||||| ||||||||||||| |||||| ||||| ||||||||||||    
T  26182700 ggtaagggctttttccccatatgtccatactaagtattaggatgatgttatgaattagagttagagattcttgtatgttgagaagaa-aaaacaactaaa 26182602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 121 - 198
Target Start/End: Complemental strand, 11166664 - 11166587
Alignment:
Q  121 caaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtc 198  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||  | ||||||| ||| |||||||||| |||||    
T  11166664 caaggtaagggctttttccccatacgttcttactaagtgttaggatcttattatgaaatagtggtagagatttttgtc 11166587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 105 - 227
Target Start/End: Complemental strand, 13777367 - 13777247
Alignment:
Q  105 taggaagggaggctcacaaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttga 204  Q
    |||||||| | ||| || |||||||| |||||||||| ||||| | || ||| ||||||||| ||||| ||||||||| ||| | |||||| ||| |||     
T  13777367 taggaaggaaagcttacgaggtaaggactttttccccgtacgtccataataaatactaggatgatgttgtgaattagaagtacaaattcttatcttttgg 13777268  T
Q  205 aaagaacaaaacaactaaaatat 227  Q
    ||||||  |||||||||||||||    
T  13777267 aaagaa--aaacaactaaaatat 13777247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 288
Target Start/End: Original strand, 24992418 - 24992578
Alignment:
Q  124 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 223  Q
    ||||||||||||||||| ||| ||   || |||||||||||  |||||||||||||| | ||||| |||||||| | |||||||||  ||||||| ||||    
T  24992418 ggtaagggctttttccc-atatgtctatattaagtactagggatatgttatgaattataagtagaaattcttgt-ttttgaaaaga--aaaacaattaaa 24992513  T
Q  224 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatg 288  Q
    ||||   || |  ||||||||||||  ||||||||||| | |||| ||||||||  |||||||||    
T  24992514 atatttctttacgtggtaaaatttattcttttataaaactgattattttaattaagttttatatg 24992578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 10751675 - 10751623
Alignment:
Q  123 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatg 175  Q
    |||||||||| |||||||||||| |||||||||||||||| ||| ||||||||    
T  10751675 aggtaagggccttttccccatacattcttactaagtactatgataatgttatg 10751623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 453
Target Start/End: Original strand, 34636450 - 34636486
Alignment:
Q  417 gaaaatatttcagtttggtccatgtggatgatgatgt 453  Q
    |||||||||||||||||||||||||||||||||||||    
T  34636450 gaaaatatttcagtttggtccatgtggatgatgatgt 34636486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 123 - 407
Target Start/End: Original strand, 8840 - 9125
Alignment:
Q  123 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaa 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  8840 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtataaattcttgtctgttgaaaagaacaaaacaactaa 8939  T
Q  223 aatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtttgtatgaaaatgttatgtggaatgacatt 322  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||    
T  8940 aatatgaattcacatggtaaaatttaaccttttataacagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatgacatt 9039  T
Q  323 tatttta-tttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatat 407  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9040 tattttattttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatat 9125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 453
Target Start/End: Original strand, 9118 - 9154
Alignment:
Q  417 gaaaatatttcagtttggtccatgtggatgatgatgt 453  Q
    ||||||||||||| |||||||||||||||||||||||    
T  9118 gaaaatatttcagattggtccatgtggatgatgatgt 9154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 123 - 453
Target Start/End: Complemental strand, 35762302 - 35761961
Alignment:
Q  123 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaa 222  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35762302 aggtaagggctttttccccatacgtccatactaagtactaggattatgttatgaattagaggtagagattcttgtatgttgaaaagaacaaaacaactaa 35762203  T
Q  223 aatatgaattcatatggtaaaatttaaccttttat--aaaagttattagtttaattatattttatatgatgtttgtatgaaaatgttatgtggaatgaca 320  Q
    |||||||||| ||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||    
T  35762202 aatatgaatttatatggtaaaatttaaccttttataaaaaagttattagtttaactatattttatatgatgtgtgtatgataatgttatgtggaatgaca 35762103  T
Q  321 tttattttatttttctattcatatatgtttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatga--------aaatatgagt 411  Q
    |||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||  ||||||||||||||||||        ||||||| ||    
T  35762102 tttattttatttttctatgcatatatgtttttgtggtattgttaatgaagtgttagactttgtagataaactaaataaatgaaaatatagaaatatgtgt 35762003  T
Q  412 tttaagaaaatatttcagtttggtccatgtggatgatgatgt 453  Q
    |||| |||||||||||| |||||| |||||||||||||||||    
T  35762002 tttatgaaaatatttcattttggttcatgtggatgatgatgt 35761961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 280 - 453
Target Start/End: Complemental strand, 37667271 - 37667098
Alignment:
Q  280 ttttatatgatgtttgtatgaaaatgttatgtggaatgacatttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactt 379  Q
    ||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37667271 ttttatatgatgtctgtatgataatgttatgtggaatgacttttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactt 37667172  T
Q  380 tgctgataaactaaataaatgaaaatatgagttttaagaaaatatttcagtttggtccatgtggatgatgatgt 453  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37667171 tgctgataaactaaataaatgaaaatatgagttttatgaaaatatttcagtttggtccatgtggatgatgatgt 37667098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 125 - 352
Target Start/End: Complemental strand, 9537602 - 9537377
Alignment:
Q  125 gtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaa 224  Q
    |||||||||||| || ||||||| | |||| ||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||  |||||| |||||    
T  9537602 gtaagggcttttacctcatacgtccatactgagtactaggatgatgttatgaattagaggtatagattcttgtctgttgagaagaa--aaacaagtaaaa 9537505  T
Q  225 tatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtttgtatgaaaatgttatgtggaatgacattta 324  Q
    ||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  9537504 tataaatttatattgtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtttgtatgataatgttatgtagaatgacattta 9537405  T
Q  325 ttttatttttctattcatatatgttttt 352  Q
    ||| || || |||| | |||||||||||    
T  9537404 tttcatgttgctatgcgtatatgttttt 9537377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 130 - 258
Target Start/End: Complemental strand, 37667393 - 37667265
Alignment:
Q  130 ggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatga 229  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37667393 ggctttttccccatacgttcttactaagtaataggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatga 37667294  T
Q  230 attcatatggtaaaatttaaccttttata 258  Q
    ||||||||| |||||||||||||||||||    
T  37667293 attcatatgataaaatttaaccttttata 37667265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 121 - 290
Target Start/End: Original strand, 16074708 - 16074879
Alignment:
Q  121 caaggtaagggctttttccccatacgttcttactaagtactaggattatg---ttatgaattagaggtagagattcttgtctgttgaaaagaacaaaaca 217  Q
    ||||||||||||||||| ||||||||||| ||||||||||| |||| |||   ||||||||||||| |||||||| ||||| ||| |||||||  |||||    
T  16074708 caaggtaagggcttttttcccatacgttcatactaagtactgggatgatgatattatgaattagagatagagatttttgtccgttaaaaagaa--aaaca 16074805  T
Q  218 actaaaatatgaattcatatggtaaaatttaaccttttataaaagttattag-tttaattatattttatatgat 290  Q
    | ||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||    
T  16074806 attaaaatatgaattcatatgttaaaatttaatcttttataaaagttattagatttaattatattttatatgat 16074879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 34 - 136
Target Start/End: Complemental strand, 24304590 - 24304488
Alignment:
Q  34 aagctccgagtccaaatccctttgcgaattttcttgtggatctttagagtctatgctagatttcatacgattaggaagggaggctcacaaggtaagggct 133  Q
    ||||| |||||||| |||||||||| |||||||||||||||||||||||| |||||||||||| ||| |||||| |||||| ||| | || |||| ||||    
T  24304590 aagcttcgagtccatatccctttgcaaattttcttgtggatctttagagtttatgctagattttatatgattagaaagggaagcttataatgtaaaggct 24304491  T
Q  134 ttt 136  Q
    |||    
T  24304490 ttt 24304488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 105 - 245
Target Start/End: Complemental strand, 21264858 - 21264718
Alignment:
Q  105 taggaagggaggctcacaaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttga 204  Q
    |||||||| | ||| || |||||||||||||||||||||||||||||||||||| |||||  | ||| || ||  || |||||  |||||||||| ||||    
T  21264858 taggaaggaaagcttacgaggtaagggctttttccccatacgttcttactaagtgctagggctttgtgattaaacaggggtagcaattcttgtcttttga 21264759  T
Q  205 aaagaacaaaacaactaaaatatgaattcatatggtaaaat 245  Q
    |||||| ||||||| ||||||||  ||| | ||||||||||    
T  21264758 aaagaagaaaacaattaaaatatttatttacatggtaaaat 21264718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 124 - 227
Target Start/End: Original strand, 6835953 - 6836056
Alignment:
Q  124 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 223  Q
    ||||||||||||||||||||||||||||||||||| |||||  | | | || || ||| |||||  |||||||||| |||||||||| ||||||| ||||    
T  6835953 ggtaagggctttttccccatacgttcttactaagtgctagggctttatgattaaataggggtagcaattcttgtcttttgaaaagaagaaaacaattaaa 6836052  T
Q  224 atat 227  Q
    ||||    
T  6836053 atat 6836056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 338060 - 338135
Alignment:
Q  123 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtct 199  Q
    ||||||||||||||||||||||||| | |||||||| ||| || |||||||| || |||||||||  ||||||||||    
T  338060 aggtaagggctttttccccatacgtccatactaagtgcta-gactatgttattaagtagaggtagtaattcttgtct 338135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 8421567 - 8421660
Alignment:
Q  116 gctcacaaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaa 210  Q
    |||| ||||||||||||||||||||||||||| | |||||||| |||||  | |||||| || |||| ||||  |||||||||| || |||||||    
T  8421567 gctctcaaggtaagggctttttccccatacgtacatactaagtgctagg-ctgtgttattaagtagaagtagcaattcttgtcttttaaaaagaa 8421660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 198
Target Start/End: Original strand, 24275569 - 24275645
Alignment:
Q  122 aaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtc 198  Q
    |||||||||||||||||| | |||||||||| ||||| ||||||   ||||||||| ||| |||| | |||||||||    
T  24275569 aaggtaagggctttttcctcgtacgttcttattaagtgctaggaccttgttatgaaatagtggtaaaaattcttgtc 24275645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 165
Target Start/End: Complemental strand, 43408006 - 43407964
Alignment:
Q  123 aggtaagggctttttccccatacgttcttactaagtactagga 165  Q
    ||||||||||||||||||||||||| | |||||||| ||||||    
T  43408006 aggtaagggctttttccccatacgtccatactaagtgctagga 43407964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 124 - 407
Target Start/End: Complemental strand, 15874186 - 15873911
Alignment:
Q  124 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  15874186 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtatgttgaaaagaacaaaacaactaaa 15874087  T
Q  224 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtttgtatgaaaatgttatgtggaatgacattt 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||||| ||||||||| |||      
T  15874086 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatatctgtatgataatgttttgtggaatggcat-- 15873989  T
Q  324 attttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatat 407  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15873988 ------tttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatat 15873911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 132 - 453
Target Start/End: Complemental strand, 21491739 - 21491405
Alignment:
Q  132 ctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaa--caaaacaactaaaatatga 229  Q
    |||||| ||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||  ||||| |||||||||||||    
T  21491739 cttttttcccatacgtccatactaagtactaggatgatgttatgaattagaggtagagattcttgtcggttgaaaagaagacaaaaaaactaaaatatga 21491640  T
Q  230 attcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtttgtatgaaaatgttatgtggaatgacatttatttta 329  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||| |||||||||||||||||    
T  21491639 atttatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtgtgcat-aaaatgttatgtagaatgacatttatttta 21491541  T
Q  330 tttttctattcatatatg---tttttgtggtatt-gtaaagaagtgttagactttgctgataaactaaataaatgaa--------aatatgagttttaag 417  Q
    ||||  ||| ||||||||   ||||||||||||| | ||||||||||| || |||| |||||||||||| |||||||        ||||||||||||| |    
T  21491540 ttttgatatgcatatatgttttttttgtggtattgggaaagaagtgttggattttgttgataaactaaagaaatgaaaatatagtaatatgagttttatg 21491441  T
Q  418 aaaatatttcagtttggtccatgtggatgatgatgt 453  Q
    ||||||||||| |||||| |||||||||||||||||    
T  21491440 aaaatatttcattttggttcatgtggatgatgatgt 21491405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 123 - 352
Target Start/End: Original strand, 22077633 - 22077860
Alignment:
Q  123 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaa 222  Q
    ||||||||||||||| |||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||  ||||||||||    
T  22077633 aggtaagggcttttttcccatatgttcatactaagtactaggatgatgttatgaattagaggtagagattcttgtctgttaagaagaa--aaacaactaa 22077730  T
Q  223 aatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtttgtatgaaaatgttatgtggaatgacatt 322  Q
    ||||| |||| |||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||    
T  22077731 aatataaatttatatggtaaaatttaaccatttcaaaaagttattagtttaattatattttatatgatgtgtgtatgataatgttatgtagaatgacatt 22077830  T
Q  323 tattttatttttctattcatatatgttttt 352  Q
    |  |||||||| |||| |||||||||||||    
T  22077831 tgctttattttcctatgcatatatgttttt 22077860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 123 - 453
Target Start/End: Complemental strand, 18367576 - 18367239
Alignment:
Q  123 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaac-aaaac--aac 219  Q
    |||||||||||||||||| |||||| | || |||| |||||||  ||||||||||||| |||||||||||||||| ||||||||||||  |||||  ||     
T  18367576 aggtaagggctttttccctatacgtccataataagaactaggacgatgttatgaattaaaggtagagattcttgtttgttgaaaagaaagaaaaccaaat 18367477  T
Q  220 taaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtttgtatgaaaatgttatgtggaatgac 319  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||        || ||| ||||||||| || |||||||    
T  18367476 taaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaattatatttta-------attatattaaaatgttacgtagaatgac 18367384  T
Q  320 atttattttatttttctattcatatatg--tttttgtggtatt-gtaaagaagtgttagactttgctgataaactaaataaatga--------aaatatg 408  Q
    ||||||||||||||  ||| ||||||||  ||||||||||||| | ||||||||||| || |||| |||||||||||| ||||||        |||||||    
T  18367383 atttattttattttgatatgcatatatgtttttttgtggtattgggaaagaagtgttggattttgttgataaactaaagaaatgaaaatatagaaatatg 18367284  T
Q  409 agttttaagaaaatatttcagtttggtccatgtggatgatgatgt 453  Q
    || ||||  ||||||||||| |||||| ||| |||||||||||||    
T  18367283 agatttataaaaatatttcattttggttcatatggatgatgatgt 18367239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 122 - 333
Target Start/End: Original strand, 48576331 - 48576540
Alignment:
Q  122 aaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 221  Q
    |||||||||||||||||||||||||| | ||||||||||| |||| |||||||||||||||||||||||||||| || ||| |||||   |||| || ||    
T  48576331 aaggtaagggctttttccccatacgtccatactaagtactgggataatgttatgaattagaggtagagattcttatccgttaaaaag---aaaataatta 48576427  T
Q  222 aaatatgaattcatatggtaaaatttaaccttttataaaagttattag-tttaattatattttatatgatgtttgtatgaaaatgttatgtggaatgaca 320  Q
    ||||||||||| ||||||||||||||||  | |||| ||||||||||| ||||||||||| ||||||||||| ||||||| ||||| |||  ||||||||    
T  48576428 aaatatgaatttatatggtaaaatttaatatcttattaaagttattagttttaattatatattatatgatgtgtgtatgataatgtgatgcagaatgaca 48576527  T
Q  321 tttattttatttt 333  Q
    |||||| ||||||    
T  48576528 tttattctatttt 48576540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 122 - 259
Target Start/End: Original strand, 9993290 - 9993427
Alignment:
Q  122 aaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 221  Q
    ||||||||||||||||||||| ||||||||||||||| |||||  | |||||| || ||| ||||   |||||||||| |||||||||| ||||||| ||    
T  9993290 aaggtaagggctttttccccacacgttcttactaagtgctagggctttgttattaaataggggtaacaattcttgtcttttgaaaagaagaaaacaatta 9993389  T
Q  222 aaatatgaattcatatggtaaaatttaaccttttataa 259  Q
    ||||||  ||| |||||||||||| |||  ||||||||    
T  9993390 aaatatttatttatatggtaaaatctaatattttataa 9993427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 123 - 264
Target Start/End: Complemental strand, 48654478 - 48654339
Alignment:
Q  123 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaa 222  Q
    ||||||||| ||||||||||||||| | |||||||||||||||| ||||| ||||||||| ||| | |||||||||| ||| |||||  |||||||||||    
T  48654478 aggtaagggttttttccccatacgtccatactaagtactaggatgatgttgtgaattagaagtacaaattcttgtcttttggaaaga--aaaacaactaa 48654381  T
Q  223 aatatgaattcatatggtaaaatttaaccttttataaaagtt 264  Q
    |||||  ||| |  |||||| |||||||  |||| |||||||    
T  48654380 aatatatatttaggtggtaatatttaacagtttacaaaagtt 48654339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 120 - 210
Target Start/End: Complemental strand, 12196819 - 12196729
Alignment:
Q  120 acaaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaa 210  Q
    |||||||||||||||||||||||||| |||||||||||| | |||| |||||||| || ||| |||||  |||||||||| || |||||||    
T  12196819 acaaggtaagggctttttccccatacattcttactaagtgcaaggactatgttattaaatagtggtagcaattcttgtcttttaaaaagaa 12196729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 453
Target Start/End: Complemental strand, 15873918 - 15873882
Alignment:
Q  417 gaaaatatttcagtttggtccatgtggatgatgatgt 453  Q
    |||||||||||||||||||||||||||||||||||||    
T  15873918 gaaaatatttcagtttggtccatgtggatgatgatgt 15873882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 119 - 164
Target Start/End: Complemental strand, 11036730 - 11036685
Alignment:
Q  119 cacaaggtaagggctttttccccatacgttcttactaagtactagg 164  Q
    |||||| ||||||||||||||||| ||||||||||||||| |||||    
T  11036730 cacaagataagggctttttccccacacgttcttactaagtgctagg 11036685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 105 - 165
Target Start/End: Complemental strand, 10289448 - 10289388
Alignment:
Q  105 taggaagggaggctcacaaggtaagggctttttccccatacgttcttactaagtactagga 165  Q
    |||||||| | ||| || ||||||||||||||||||||||||| | |||||||| ||||||    
T  10289448 taggaaggaaagcttacgaggtaagggctttttccccatacgtccatactaagtgctagga 10289388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 122 - 160
Target Start/End: Original strand, 7503908 - 7503946
Alignment:
Q  122 aaggtaagggctttttccccatacgttcttactaagtac 160  Q
    |||||||||||||||||||||||||| | ||||||||||    
T  7503908 aaggtaagggctttttccccatacgtccatactaagtac 7503946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 163; Significance: 7e-87; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 204 - 407
Target Start/End: Original strand, 536895 - 537090
Alignment:
Q  204 aaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtttgtatgaaaa 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  536895 aaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataa 536994  T
Q  304 tgttatgtggaatgacatttattttatttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaa 403  Q
    |||||||||||||| |||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536995 tgttatgtggaatggcat--------tttttctattcatatatgtttttgtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaa 537086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 124 - 284
Target Start/End: Original strand, 536731 - 536891
Alignment:
Q  124 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536731 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaa 536830  T
Q  224 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536831 atatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 536891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 123 - 451
Target Start/End: Complemental strand, 4558222 - 4557883
Alignment:
Q  123 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaaga-acaaaacaacta 221  Q
    |||||||||||||||||| ||||||   ||||||||| |||||| ||||||||| ||||||||||||||||||||||||||| |||| | |||| |||||    
T  4558222 aggtaagggctttttccc-atacgtctatactaagtattaggatgatgttatgatttagaggtagagattcttgtctgttgagaagagagaaaaaaacta 4558124  T
Q  222 aaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtttgtatgaaaatgttatgtggaatgacat 321  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||| | ||||||| || ||||||| |    
T  4558123 aaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaatcatattttatataatgtgtgtataataatgttacgtagaatgactt 4558024  T
Q  322 ttattttatttttctattcatatatgt--ttttgtggtattg-taaagaagtgttagactttgctgataaactaaataaatga--------aaatatgag 410  Q
    ||||||||||||  ||| |||||||||  |||||||||||||  ||||||||||| || |||| |||||||||||| ||||||        |||||||||    
T  4558023 ttattttattttgatatgcatatatgtttttttgtggtattgagaaagaagtgttggattttgttgataaactaaagaaatgaaaatatataaatatgag 4557924  T
Q  411 ttttaagaaaatatttcagtttggtccatgtggatgatgat 451  Q
    ||||| |||||||||||| |||||| |||||||||||||||    
T  4557923 ttttatgaaaatatttcattttggttcatgtggatgatgat 4557883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 35 - 210
Target Start/End: Original strand, 6308536 - 6308710
Alignment:
Q  35 agctccgagtccaaatccctttgcgaattttcttgtggatctttagagtctatgctagatttcatacgattaggaagggaggctcacaaggtaagggctt 134  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||| ||||||||||    
T  6308536 agctctgagtccaaatccctttgcgaattttcttgtggatctttagagtctatgctagatttcgtacgattaggaagggaagcttacaa-gtaagggctt 6308634  T
Q  135 tttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaa 210  Q
    ||| |||||| ||||||| ||| |  ||||| | |||||| || ||| |||||  |||||||||| ||||||||||    
T  6308635 ttttcccataggttcttattaaatgttaggactgtgttattaaatagtggtagcaattcttgtctcttgaaaagaa 6308710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 122 - 210
Target Start/End: Original strand, 27026620 - 27026708
Alignment:
Q  122 aaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaa 210  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||| |||||| || ||| ||||   |||||||||| ||||||||||    
T  27026620 aaggtaagggctttttccccatacgtttttactaagtgctaggattgtgttattaaatagtggtaacaattcttgtcttttgaaaagaa 27026708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 417 - 453
Target Start/End: Original strand, 537083 - 537119
Alignment:
Q  417 gaaaatatttcagtttggtccatgtggatgatgatgt 453  Q
    |||||||||||||||||||||||||||||||||||||    
T  537083 gaaaatatttcagtttggtccatgtggatgatgatgt 537119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 159; Significance: 2e-84; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 156 - 453
Target Start/End: Original strand, 49499045 - 49499351
Alignment:
Q  156 agtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaacctttt 255  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||| ||||| |||| |||||||||||||||| |||| |||||||||||||||||    
T  49499045 agtactaggatcatgttatgaattagaggtggagattcttgtctgttgagaagaaaaaaaaaactaaaatatgaatttatatagtaaaatttaacctttt 49499144  T
Q  256 ataaaagttattagtttaattatattttatatgatgtttgtatgaaaatgttatgtggaatgacatttattttatttttctattcatatatg-tttttgt 354  Q
    |||||| ||||||||||||||||||||||||| |||| ||||| || |||||| || |||||||||||||||||||||  ||| |||||||| |||||||    
T  49499145 ataaaaattattagtttaattatattttatataatgtgtgtat-aagatgttacgtagaatgacatttattttattttgatatgcatatatgttttttgt 49499243  T
Q  355 ggtatt-gtaaagaagtgttagactttgctgataaactaaataaatga--------aaatatgagttttaagaaaatatttcagtttggtccatgtggat 445  Q
    |||||| | ||||||||||| || |||| |||||||||||| ||||||        |||||||||||||| |||||||||||| |||||| |||||||||    
T  49499244 ggtattgggaaagaagtgttggattttgttgataaactaaagaaatgaaaatatagaaatatgagttttatgaaaatatttcattttggttcatgtggat 49499343  T
Q  446 gatgatgt 453  Q
    ||||||||    
T  49499344 gatgatgt 49499351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 122 - 352
Target Start/End: Complemental strand, 28969432 - 28969204
Alignment:
Q  122 aaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 221  Q
    |||||||||| ||||||| ||||||| | |||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||  |||||||||    
T  28969432 aaggtaagggttttttcctcatacgtccatactaagtactaggatgatgttatgaattagaggtagaaattcttgtctgttgagaagaa--aaacaacta 28969335  T
Q  222 aaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtttgtatgaaaatgttatgtggaatgacat 321  Q
    |||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||| ||| |||||| |||||||||    
T  28969334 aaatattaatttatatggtaaaatttaacattttataaaagttattagtttaattatattctatatgatgtgtgtatgataattttatgtagaatgacat 28969235  T
Q  322 ttattttatttttctattcatatatgttttt 352  Q
    |||||||||||| |||| |||||||||||||    
T  28969234 ttattttattttgctatgcatatatgttttt 28969204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 119 - 209
Target Start/End: Original strand, 41868566 - 41868655
Alignment:
Q  119 cacaaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaaga 209  Q
    ||||||||||| ||||||| ||||||||| | ||||||||| |||||| ||||| ||||||||| ||||| |||||||||| |||||||||    
T  41868566 cacaaggtaagtgcttttt-cccatacgtccatactaagtattaggatgatgttgtgaattagaagtagaaattcttgtctcttgaaaaga 41868655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 210
Target Start/End: Original strand, 40458906 - 40458992
Alignment:
Q  123 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaa 210  Q
    ||||||||||||||||||||||||| | |||||||| ||| || | |||||| || |||||||||  |||||||||| || |||||||    
T  40458906 aggtaagggctttttccccatacgtccatactaagtgcta-gactgtgttattaagtagaggtagcaattcttgtcttttaaaaagaa 40458992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 136; Significance: 9e-71; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 123 - 274
Target Start/End: Complemental strand, 32735542 - 32735391
Alignment:
Q  123 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaa 222  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32735542 aggtaagggctttttccccatacgttcttactaagtgctaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaa 32735443  T
Q  223 aatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaa 274  Q
    |||||| ||||||||||| ||||||||||||||||||||| |||||||||||    
T  32735442 aatatgcattcatatggtgaaatttaaccttttataaaagatattagtttaa 32735391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 122 - 227
Target Start/End: Complemental strand, 12775057 - 12774954
Alignment:
Q  122 aaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 221  Q
    |||||||||||||||||||||||||| | ||| |||||||||||| ||||| ||||||||| ||| | |||||| ||| ||| |||||  ||||||||||    
T  12775057 aaggtaagggctttttccccatacgtccatacaaagtactaggatgatgttgtgaattagaagtacaaattcttatcttttggaaaga--aaaacaacta 12774960  T
Q  222 aaatat 227  Q
    ||||||    
T  12774959 aaatat 12774954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 123 - 290
Target Start/End: Original strand, 1193599 - 1193765
Alignment:
Q  123 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaa 222  Q
    |||||||||||||||||| ||| ||||||||||||| |||| | | |||||| ||  || |||||  |||||||||| |||||||||| ||||||| |||    
T  1193599 aggtaagggctttttccc-ataagttcttactaagtgctagtactttgttattaaacaggggtagcaattcttgtcttttgaaaagaagaaaacaattaa 1193697  T
Q  223 aatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgat 290  Q
    |||||  ||| | |||||||| | |||  |||||||| ||| |||| |||||||   |||||||||||    
T  1193698 aatatttatttacatggtaaagtctaatattttataagagtgattattttaattgagttttatatgat 1193765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 122 - 227
Target Start/End: Complemental strand, 28267794 - 28267692
Alignment:
Q  122 aaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaacta 221  Q
    |||||||||| |||||||| |||||| | |||||||||||||||| ||||| ||||||||| ||| | |||||| ||| |||||||||  ||||||||||    
T  28267794 aaggtaagggttttttccc-atacgtccatactaagtactaggatgatgttgtgaattagaagtacaaattcttatcttttgaaaaga--aaaacaacta 28267698  T
Q  222 aaatat 227  Q
    ||||||    
T  28267697 aaatat 28267692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 190 - 316
Target Start/End: Original strand, 29270702 - 29270827
Alignment:
Q  190 attcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatga 289  Q
    |||||||||| ||||||||||  |||||| ||||||||| | | | || |||||||||||  |||||||||| |||||| |||||||||| ||||| |||    
T  29270702 attcttgtcttttgaaaagaa--aaacaattaaaatatgtagttacatagtaaaatttaatattttataaaaattattattttaattata-tttatttga 29270798  T
Q  290 tgtt--tgtatgaaaatgttatgtggaat 316  Q
    | ||  ||||||| ||||| |||||||||    
T  29270799 tatttgtgtatgagaatgtgatgtggaat 29270827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 40447433 - 40447508
Alignment:
Q  123 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtct 199  Q
    ||||||||||||||||||||||||| | |||||||| ||| || |||||||| || |||||||||  ||||||||||    
T  40447433 aggtaagggctttttccccatacgtccatactaagtgcta-gactatgttattaagtagaggtagtaattcttgtct 40447508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 23828374 - 23828298
Alignment:
Q  122 aaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtc 198  Q
    |||||||||  ||||| |||| |||||||||||||||  ||||| | ||||||||| ||| |||||| |||||||||    
T  23828374 aaggtaaggatttttttcccacacgttcttactaagtgttaggactttgttatgaaatagtggtagaaattcttgtc 23828298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 210
Target Start/End: Complemental strand, 18292970 - 18292882
Alignment:
Q  121 caaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaa 210  Q
    ||||||||||| ||||| ||||||||| | |||||||| |||||  | |||||| || |||||||||  |||||||||| || |||||||    
T  18292970 caaggtaagggtttttttcccatacgtccatactaagtgctagg-ctgtgttattaagtagaggtagcaattcttgtcttttaaaaagaa 18292882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 44788531 - 44788617
Alignment:
Q  139 cccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatat 227  Q
    ||||||||||||||||||||  ||||| | |||||| || ||| |||||  ||| |||||| |||||||||  ||||||| ||||||||    
T  44788531 cccatacgttcttactaagtgttaggactgtgttattaaatagtggtagtaattattgtcttttgaaaaga--aaaacaattaaaatat 44788617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 108; Significance: 5e-54; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 168 - 346
Target Start/End: Original strand, 221 - 397
Alignment:
Q  168 atgttatgaattagaggtagagattcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttatt 267  Q
    |||||||||||||||| ||||||||||||| |||| |||||||  ||| || |||||||| |||  ||||||||||||||||||||||||||||||||||    
T  221 atgttatgaattagagatagagattcttgtttgttaaaaagaa--aaataattaaaatataaatctatatggtaaaatttaaccttttataaaagttatt 318  T
Q  268 agtttaattatattttatatgatgtttgtatgaaaatgttatgtggaatgacatttattttatttttctattcatatat 346  Q
    ||||||||||||||||||||||||| ||||||| |||||||||| ||||| ||||||||||||||| | || |||||||    
T  319 agtttaattatattttatatgatgtgtgtatgataatgttatgtagaatgccatttattttattttgccatgcatatat 397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 119 - 198
Target Start/End: Complemental strand, 2724 - 2645
Alignment:
Q  119 cacaaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtc 198  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| | |||||| || ||| |||||| |||||||||    
T  2724 cacaaggtaagggctttttccccatacgttcttactaagtgctaggactttgttataaaatagtggtagaaattcttgtc 2645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 105 - 227
Target Start/End: Complemental strand, 22816607 - 22816487
Alignment:
Q  105 taggaagggaggctcacaaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttga 204  Q
    |||||||| | |||| | ||||||||||||||||||||||||||||| ||||||  ||||| | |||||| || ||| ||| |  |||||||||| ||||    
T  22816607 taggaaggaaagctctcgaggtaagggctttttccccatacgttcttgctaagtgttaggactgtgttattaaatagtggttgcaattcttgtctcttga 22816508  T
Q  205 aaagaacaaaacaactaaaatat 227  Q
    |||||  ||||||| ||||||||    
T  22816507 aaaga--aaaacaattaaaatat 22816487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 210
Target Start/End: Complemental strand, 40841652 - 40841568
Alignment:
Q  125 gtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctgttgaaaagaa 210  Q
    |||||||||||||||| |||||||||||||||||  ||||| | |||||| || ||| |||||  |||||||||| ||||||||||    
T  40841652 gtaagggctttttccc-atacgttcttactaagtgttaggactgtgttattaaatagtggtagcaattcttgtcttttgaaaagaa 40841568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 190 - 290
Target Start/End: Original strand, 35839168 - 35839268
Alignment:
Q  190 attcttgtctgttgaaaagaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatga 289  Q
    |||||||||| |||||||||| ||||||| ||||||||  ||| | |||||||||| |||  |||||||| ||| |||| |||||||   ||||||||||    
T  35839168 attcttgtcttttgaaaagaagaaaacaattaaaatatttatttacatggtaaaatctaatattttataagagtgattattttaattgagttttatatga 35839267  T
Q  290 t 290  Q
    |    
T  35839268 t 35839268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 198
Target Start/End: Complemental strand, 20265074 - 20264999
Alignment:
Q  123 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtc 198  Q
    ||||||||| |||||||| ||||||||||| ||||| |||||||  |||| |||| ||| |||||| |||||||||    
T  20265074 aggtaagggatttttcccgatacgttcttagtaagtgctaggatcgtgttttgaagtagtggtagaaattcttgtc 20264999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 123 - 198
Target Start/End: Complemental strand, 21051703 - 21051628
Alignment:
Q  123 aggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtc 198  Q
    ||||||||| |||||||| ||||||||||| ||||| |||||||  |||| |||| ||| |||||| |||||||||    
T  21051703 aggtaagggatttttcccgatacgttcttagtaagtgctaggatcgtgttttgaagtagtggtagaaattcttgtc 21051628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 101 - 227
Target Start/End: Complemental strand, 243296 - 243170
Alignment:
Q  101 cgattaggaagggaggctcacaaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtctg 200  Q
    |||||||||||| | |||  | |||||| ||| |||||||||||| ||||||||||||  ||||  | |||||| || ||| ||||   ||||||||||     
T  243296 cgattaggaaggaaagctttcgaggtaatggcgttttccccatacattcttactaagtgttagggctttgttattaaataggggtatcaattcttgtctt 243197  T
Q  201 ttgaaaagaacaaaacaactaaaatat 227  Q
    |||||||||| ||||||| ||||||||    
T  243196 ttgaaaagaagaaaacaattaaaatat 243170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 122 - 198
Target Start/End: Complemental strand, 356960 - 356884
Alignment:
Q  122 aaggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattcttgtc 198  Q
    |||||||||  |||||||||||||||||||||||||| ||||||   |||| |||| ||| |||||| |||||||||    
T  356960 aaggtaaggattttttccccatacgttcttactaagtgctaggaccgtgttttgaagtagtggtagaaattcttgtc 356884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 10884 - 10920
Alignment:
Q  122 aaggtaagggctttttccccatacgttcttactaagt 158  Q
    |||||||||  ||||||||||||||||||||||||||    
T  10884 aaggtaaggattttttccccatacgttcttactaagt 10920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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