View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19996_low_7 (Length: 404)
Name: NF19996_low_7
Description: NF19996
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19996_low_7 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 353; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 10 - 404
Target Start/End: Complemental strand, 29279986 - 29279592
Alignment:
| Q |
10 |
gtgagatgaatgcaattgccaaaatgtctttttatctgaagacattttggttgatgatattacaatataaggataaataaaaccaatagttgtcgatata |
109 |
Q |
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| T |
29279986 |
gtgatatgaatgcaattgccaaaatggctttttatctgaagacattttggttgatgatattacaatataaggataaataaaaccaatagttgtcgatata |
29279887 |
T |
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| Q |
110 |
atatggtttaagtatagaatagcaaatttataaacnnnnnnnnnnagaagcaaatttataaacttcaaatttattgttctgatacgtcaaaatgtattac |
209 |
Q |
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| T |
29279886 |
atatggtttaagtatagaatagcaaatttataaacttttttttttagaagcaaatttataaacttcaaatttattgttctgatacgtcaaaatgtattac |
29279787 |
T |
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| Q |
210 |
ataaatcaaatacagctaaagcataagaaatgccaagctgtatcaaaacagatcatagtttgatacagagaaaagtacaaggtagtctccaagaccttta |
309 |
Q |
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| T |
29279786 |
ataaatcaaatacagctaaagcataagaaatgccaagctgtatcaaaacagatcatagtttgatacagagaaaggtacaaggtagtctccaagaccttta |
29279687 |
T |
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| Q |
310 |
atgcaaaacatggataagaagcactactccacctccatgacaatcacaatcagatcagaatactttgtatgcatggaaacaacagacacgagtga |
404 |
Q |
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| T |
29279686 |
atgcaaaacatggataagaagcactactccacctccatgacaatcacaatcagatcagaatactttgtatgcatggaaacaacagacacgagtga |
29279592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 202 - 282
Target Start/End: Complemental strand, 29271334 - 29271254
Alignment:
| Q |
202 |
tgtattacataaatcaaatacagctaaagcataagaaatgccaagctgtatcaaaacagatcatagtttgatacagagaaa |
282 |
Q |
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| T |
29271334 |
tgtattacatgaatcaaatctagctaaagcataagaaatgcaaagctatatcaaaagagatcatagtttgatacagagaaa |
29271254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 29271527 - 29271430
Alignment:
| Q |
15 |
atgaatgcaattgccaaaatgt----ctttttatctgaagacattttggttgatgatattacaatataaggataaataaaaccaatagttgtcgatata |
109 |
Q |
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| T |
29271527 |
atgaatgcaattgcccaaatgtatgtctttttatcagaagacattttggttgatgat-ttacaacataaggatatataaaaagaatagttgttgatata |
29271430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 280 - 308
Target Start/End: Complemental strand, 29271183 - 29271155
Alignment:
| Q |
280 |
aaaagtacaaggtagtctccaagaccttt |
308 |
Q |
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| T |
29271183 |
aaaagtacaaggtagtctccaagaccttt |
29271155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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