View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19997_high_12 (Length: 207)

Name: NF19997_high_12
Description: NF19997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19997_high_12
NF19997_high_12
[»] chr4 (23 HSPs)
chr4 (5-197)||(32935692-32935884)
chr4 (1-78)||(49065557-49065634)
chr4 (4-76)||(42039021-42039093)
chr4 (1-68)||(49261801-49261868)
chr4 (1-78)||(27761136-27761213)
chr4 (1-78)||(38131442-38131519)
chr4 (5-76)||(372703-372774)
chr4 (1-76)||(13856070-13856145)
chr4 (5-68)||(24608170-24608233)
chr4 (1-68)||(31936339-31936406)
chr4 (4-78)||(21713171-21713245)
chr4 (34-78)||(31823045-31823089)
chr4 (3-62)||(2777980-2778039)
chr4 (1-78)||(9242925-9243002)
chr4 (5-74)||(40962703-40962773)
chr4 (1-67)||(13867800-13867866)
chr4 (27-76)||(40220991-40221041)
chr4 (1-78)||(14289713-14289790)
chr4 (156-197)||(36174298-36174339)
chr4 (156-197)||(46814169-46814210)
chr4 (156-197)||(47043708-47043749)
chr4 (156-197)||(53266089-53266130)
chr4 (34-78)||(14329021-14329065)
[»] chr7 (12 HSPs)
chr7 (5-189)||(21153762-21153946)
chr7 (1-78)||(41219381-41219458)
chr7 (1-77)||(37524164-37524240)
chr7 (1-79)||(34354394-34354472)
chr7 (1-78)||(39476532-39476609)
chr7 (1-78)||(8260883-8260961)
chr7 (5-75)||(21613032-21613102)
chr7 (1-71)||(27874038-27874108)
chr7 (1-78)||(18239413-18239490)
chr7 (1-68)||(29714302-29714370)
chr7 (156-197)||(1536965-1537006)
chr7 (156-197)||(34354302-34354343)
[»] chr2 (9 HSPs)
chr2 (1-132)||(29132588-29132718)
chr2 (9-143)||(28266018-28266155)
chr2 (1-78)||(29908506-29908583)
chr2 (4-78)||(6903722-6903795)
chr2 (1-78)||(12874246-12874323)
chr2 (28-65)||(25686072-25686109)
chr2 (1-80)||(8556241-8556320)
chr2 (156-197)||(11713276-11713317)
chr2 (5-78)||(13785051-13785124)
[»] chr1 (21 HSPs)
chr1 (1-76)||(18843986-18844061)
chr1 (1-78)||(3660183-3660260)
chr1 (1-78)||(48566761-48566838)
chr1 (1-78)||(21482909-21482986)
chr1 (1-78)||(41871736-41871813)
chr1 (1-78)||(49597196-49597273)
chr1 (5-76)||(47983689-47983760)
chr1 (1-78)||(39222706-39222783)
chr1 (1-78)||(46923781-46923858)
chr1 (4-68)||(5770578-5770642)
chr1 (1-61)||(10308477-10308537)
chr1 (4-44)||(5766863-5766903)
chr1 (1-53)||(18178921-18178973)
chr1 (28-78)||(46178671-46178721)
chr1 (2-78)||(1671331-1671408)
chr1 (5-78)||(11012143-11012216)
chr1 (1-54)||(23602987-23603040)
chr1 (5-78)||(26013689-26013762)
chr1 (156-197)||(47485706-47485747)
chr1 (156-197)||(50065781-50065822)
chr1 (34-78)||(30858534-30858578)
[»] chr5 (16 HSPs)
chr5 (5-78)||(10532800-10532873)
chr5 (1-78)||(6427287-6427364)
chr5 (1-78)||(41758718-41758795)
chr5 (1-80)||(7083976-7084055)
chr5 (1-78)||(1172942-1173019)
chr5 (1-78)||(28784776-28784853)
chr5 (1-59)||(16100884-16100942)
chr5 (5-78)||(10399270-10399343)
chr5 (1-46)||(11125823-11125868)
chr5 (1-76)||(19043889-19043964)
chr5 (156-197)||(1172824-1172865)
chr5 (156-197)||(1974473-1974514)
chr5 (156-197)||(3461302-3461343)
chr5 (156-197)||(10532929-10532970)
chr5 (5-62)||(25898642-25898699)
chr5 (156-197)||(40017072-40017113)
[»] chr3 (11 HSPs)
chr3 (1-78)||(25574830-25574907)
chr3 (1-76)||(6755723-6755798)
chr3 (1-78)||(39415349-39415426)
chr3 (1-70)||(48086846-48086915)
chr3 (1-79)||(6462999-6463077)
chr3 (5-143)||(8628438-8628575)
chr3 (1-74)||(50561447-50561520)
chr3 (156-197)||(35485563-35485604)
chr3 (156-197)||(42947682-42947723)
chr3 (156-197)||(53824609-53824650)
chr3 (153-197)||(2325331-2325375)
[»] chr6 (10 HSPs)
chr6 (1-78)||(319228-319305)
chr6 (1-74)||(23912260-23912333)
chr6 (1-78)||(13312590-13312667)
chr6 (5-62)||(17399041-17399098)
chr6 (92-197)||(11718538-11718644)
chr6 (5-117)||(24173565-24173676)
chr6 (34-78)||(2419802-2419846)
chr6 (1-47)||(9521416-9521462)
chr6 (25-78)||(11718663-11718716)
chr6 (156-197)||(16444584-16444625)
[»] scaffold0861 (1 HSPs)
scaffold0861 (1-78)||(3731-3808)
[»] chr8 (6 HSPs)
chr8 (1-78)||(23542749-23542826)
chr8 (1-78)||(34471599-34471675)
chr8 (1-78)||(43693571-43693648)
chr8 (5-76)||(3964017-3964087)
chr8 (158-197)||(28704162-28704201)
chr8 (156-197)||(43635426-43635467)
[»] scaffold0753 (1 HSPs)
scaffold0753 (1-78)||(4002-4080)
[»] scaffold0217 (1 HSPs)
scaffold0217 (28-78)||(25630-25680)
[»] scaffold0223 (1 HSPs)
scaffold0223 (1-68)||(16098-16166)


Alignment Details
Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 5 - 197
Target Start/End: Original strand, 32935692 - 32935884
Alignment:
Q  5 ttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaatannnnnnnggtatttggtcagtttt 104  Q
    ||||||||||||||||| || | ||||| ||||||||||||||||||||| ||||| |||||||||||||||||         ||| |||||||||||||    
T  32935692 ttaagtcacgcaccacttgcctatgcgcgagttaactcacgcacgttggccggtggccagagctgaagaacaaa-cgttttttggtctttggtcagtttt 32935790  T
Q  105 tcaacattcaatctaccc--tttttttacccattatacacgnnnnnnnnnacaacattaatagtgtttataacctatactaccattctcacctat 197  Q
    |||||||||||||||| |  |||||||| | ||||||||||         || |||||||| ||||||||||||||||||||||||| |||||||    
T  32935791 tcaacattcaatctacacgttttttttatcaattatacacg-tttttttgaccacattaatggtgtttataacctatactaccattcccacctat 32935884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 49065634 - 49065557
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    |||||||||||||||||||||||| | ||||| ||||||||||||||| ||||| |||||||||||||||||||||||    
T  49065634 tgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcaccttggccggtggtcagagctgaagaacaaa 49065557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 42039021 - 42039093
Alignment:
Q  4 cttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaaca 76  Q
    |||| |||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||| ||||||||||    
T  42039021 cttatgtcacgcaccactggcctgtgcgcgagttaactcacgcacgttggccggtggtcagaactgaagaaca 42039093  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 49261868 - 49261801
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagct 68  Q
    |||||||||||||||||||||| ||||||||||||||||| |||||| |||||| | ||||| |||||    
T  49261868 tgacttaagtcacgcaccactgacatgtgcgcaagttaacccacgcaggttggccgatggtctgagct 49261801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 27761213 - 27761136
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    ||||||||||||||||||||| || | ||||| ||||||||||| ||||||||| ||| |||||| || |||||||||    
T  27761213 tgacttaagtcacgcaccactagcctatgcgcgagttaactcacacacgttggccggtagtcagaactcaagaacaaa 27761136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 38131442 - 38131519
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    |||||||||||||||||||| ||| | ||| | |||||||||||||||||| || |||||||| | ||||||||||||    
T  38131442 tgacttaagtcacgcaccacgggcctatgcacgagttaactcacgcacgttagccggtggtcacaactgaagaacaaa 38131519  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 372703 - 372774
Alignment:
Q  5 ttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaaca 76  Q
    |||||||||||||||||||||||||||  ||||||  |||||| |||||| ||||||| ||||| |||||||    
T  372703 ttaagtcacgcaccactggcatgtgcgtgagttaatccacgcaggttggccggtggtctgagctcaagaaca 372774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 13856145 - 13856070
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaaca 76  Q
    |||||||||||||||| |||||||   ||| |||||||||||||||| |||||| ||||||| ||||| |||||||    
T  13856145 tgacttaagtcacgcatcactggccgatgcacaagttaactcacgcaggttggccggtggtctgagctcaagaaca 13856070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 24608233 - 24608170
Alignment:
Q  5 ttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagct 68  Q
    |||||||||||| |||||| |||||||| |||||||||||||| |||||| |||||| ||||||    
T  24608233 ttaagtcacgcatcactggtatgtgcgcgagttaactcacgcaagttggccggtggttagagct 24608170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 31936406 - 31936339
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagct 68  Q
    |||||||||||||||||||||||| || |||| |||||||||||||| |||||| | ||||| |||||    
T  31936406 tgacttaagtcacgcaccactggcctgggcgcgagttaactcacgcaggttggccgatggtctgagct 31936339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 21713245 - 21713171
Alignment:
Q  4 cttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    |||||||||||||||| |||| | ||| | ||||||||||||||   |||| |||||||||||||||||||||||    
T  21713245 cttaagtcacgcaccaatggcctatgcacgagttaactcacgcaacatggccggtggtcagagctgaagaacaaa 21713171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 31823045 - 31823089
Alignment:
Q  34 agttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||    
T  31823045 agttaactcacgcacgttggccggtggtcagaactgaagaacaaa 31823089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 2777980 - 2778039
Alignment:
Q  3 acttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtc 62  Q
    ||||||||||| | |||||||| ||||||| |||||||||||||| |||||| |||||||    
T  2777980 acttaagtcacacgccactggcctgtgcgcgagttaactcacgcaagttggccggtggtc 2778039  T

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Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 9243002 - 9242925
Alignment:
Q  1 tgacttaagtcacgcaccactg-gcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    |||||||||||||||||||||| || | | ||| |||||||||||||| |||||| ||| |||||| ||||||||||||    
T  9243002 tgacttaagtcacgcaccactgagcct-tccgcgagttaactcacgcaagttggccggtagtcagaactgaagaacaaa 9242925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 5 - 74
Target Start/End: Complemental strand, 40962773 - 40962703
Alignment:
Q  5 ttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctgg-tggtcagagctgaagaa 74  Q
    ||||||||| |||||||||||| ||| | |||||||||||||| |||||| || ||||||||||| |||||    
T  40962773 ttaagtcacacaccactggcatttgcacgagttaactcacgcaggttggccggttggtcagagctcaagaa 40962703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 13867866 - 13867800
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagc 67  Q
    ||||||||||||||||||||| ||  |||||| || ||||||||||| |||||| | ||||| ||||    
T  13867866 tgacttaagtcacgcaccactagccggtgcgcgagctaactcacgcaagttggccgatggtctgagc 13867800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 40220991 - 40221041
Alignment:
Q  27 gtgcgcaagttaactcacgcacgttggctgg-tggtcagagctgaagaaca 76  Q
    ||||||||||||||||||||| |||||| || ||||||||||| |||||||    
T  40220991 gtgcgcaagttaactcacgcaagttggccggttggtcagagctcaagaaca 40221041  T

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Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 14289713 - 14289790
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    ||||||||||||| ||||||||   | ||||| |||||||||| | || ||||  |||||||||||||||| ||||||    
T  14289713 tgacttaagtcacacaccactgatctatgcgcgagttaactcatgtaccttggtcggtggtcagagctgaaaaacaaa 14289790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 36174339 - 36174298
Alignment:
Q  156 acattaatagtgtttataacctatactaccattctcacctat 197  Q
    |||||||| ||||||| ||||||||||||||||| |||||||    
T  36174339 acattaatggtgtttacaacctatactaccattcccacctat 36174298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 46814169 - 46814210
Alignment:
Q  156 acattaatagtgtttataacctatactaccattctcacctat 197  Q
    |||||||| ||||||| ||||||||||||||||| |||||||    
T  46814169 acattaatggtgtttacaacctatactaccattcccacctat 46814210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 47043749 - 47043708
Alignment:
Q  156 acattaatagtgtttataacctatactaccattctcacctat 197  Q
    |||||||| ||||||| ||||||||||||||||| |||||||    
T  47043749 acattaatggtgtttacaacctatactaccattcccacctat 47043708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 53266089 - 53266130
Alignment:
Q  156 acattaatagtgtttataacctatactaccattctcacctat 197  Q
    |||||||| ||||||| ||||||||||||||||| |||||||    
T  53266089 acattaatggtgtttacaacctatactaccattcccacctat 53266130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 14329021 - 14329065
Alignment:
Q  34 agttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    |||||||||||| || |||| ||||||||||||||||| ||||||    
T  14329021 agttaactcacgtaccttggttggtggtcagagctgaaaaacaaa 14329065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 189
Target Start/End: Original strand, 21153762 - 21153946
Alignment:
Q  5 ttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaatannnnnnnggtatttggtcagtttt 104  Q
    |||||||||||||||||||||||||||  ||||||||||||||||| ||| ||||||| ||||||||||||| |         ||| |||| ||||||||    
T  21153762 ttaagtcacgcaccactggcatgtgcgtgagttaactcacgcacgtcggccggtggtcggagctgaagaacaga-cgttttttggtctttgctcagtttt 21153860  T
Q  105 tcaacattcaatctaccctttttttacccattatacacg-nnnnnnnnnacaacattaatagtgtttataacctatactaccattc 189  Q
    || ||||||| ||||| | ||||||||||||||||||||          || |||||||| |||||||||||||||||||||||||    
T  21153861 tccacattcagtctacacgttttttacccattatacacgttttttttttaccacattaattgtgtttataacctatactaccattc 21153946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 41219458 - 41219381
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    |||||||||||||||| ||||||| | ||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  41219458 tgacttaagtcacgcatcactggcctatgcgcgagttaactcacgcacgttggctggtggtcagaactgaagaacaaa 41219381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 37524240 - 37524164
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaa 77  Q
    |||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| |||||| ||||    
T  37524240 tgacttaagtcacgcaccactggcctgtgcgcgagttacctcacgcacgttggctggtggtcagaactgaagtacaa 37524164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 34354472 - 34354394
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaat 79  Q
    |||||||||||||| ||||||||| | ||||| ||||||||||| |||||||||||||| |||| | ||||||||||||    
T  34354472 tgacttaagtcacgtaccactggcctatgcgcgagttaactcacacacgttggctggtgatcagtgttgaagaacaaat 34354394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 39476532 - 39476609
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    ||||||||||||||||||| | || | ||||| |||||||||||||||  |||| |||||||||||||||||||||||    
T  39476532 tgacttaagtcacgcaccattagcctatgcgcgagttaactcacgcaccatggccggtggtcagagctgaagaacaaa 39476609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 8260883 - 8260961
Alignment:
Q  1 tgacttaagtcacgcaccactg-gcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    |||||||||||||||||||||| || | ||||| |||||||||||||| |||||| |||||||||| |||| |||||||    
T  8260883 tgacttaagtcacgcaccactgagcctttgcgcgagttaactcacgcaagttggccggtggtcagaactgatgaacaaa 8260961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 21613032 - 21613102
Alignment:
Q  5 ttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaac 75  Q
    ||||||||||||||| |||||||||||| ||||||||||||||  ||| | |||||||||| |||||||||    
T  21613032 ttaagtcacgcaccattggcatgtgcgcgagttaactcacgcagcttgaccggtggtcagaactgaagaac 21613102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 27874108 - 27874038
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaa 71  Q
    ||||||||| |||||||||||| | | ||||| ||||||||||||||||||||| |||||||||| |||||    
T  27874108 tgacttaagccacgcaccactgacctatgcgcgagttaactcacgcacgttggccggtggtcagaactgaa 27874038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 18239490 - 18239413
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    |||||||||||||||| || |||| | ||||| |||||||| |||||||||||  |||||||||| ||||||||||||    
T  18239490 tgacttaagtcacgcatcaatggcctatgcgcgagttaactaacgcacgttggtcggtggtcagaactgaagaacaaa 18239413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 29714302 - 29714370
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctgg-tggtcagagct 68  Q
    |||||||||||| ||||||||| | || |||| |||||||||||||| |||||| || |||||||||||    
T  29714302 tgacttaagtcatgcaccactgacttgggcgcgagttaactcacgcaggttggccggttggtcagagct 29714370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 1537006 - 1536965
Alignment:
Q  156 acattaatagtgtttataacctatactaccattctcacctat 197  Q
    |||||||| ||||||| ||||||||||||||||| |||||||    
T  1537006 acattaatggtgtttacaacctatactaccattcccacctat 1536965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 34354343 - 34354302
Alignment:
Q  156 acattaatagtgtttataacctatactaccattctcacctat 197  Q
    |||||||| || |||| |||||||||||||||||||||||||    
T  34354343 acattaatggtctttacaacctatactaccattctcacctat 34354302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 3e-25; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 29132718 - 29132588
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaatannnnnnnggtatttggtcag 100  Q
    |||||||||||||||||||| ||| | ||||| ||||||||||||||||||||| |||||||||||||||||||||||         ||| |||||||||    
T  29132718 tgacttaagtcacgcaccaccggcctatgcgcgagttaactcacgcacgttggccggtggtcagagctgaagaacaaa-cgttttttggtctttggtcag 29132620  T
Q  101 tttttcaacattcaatctaccctttttttacc 132  Q
    |||||||||||||| || || | |||||||||    
T  29132619 tttttcaacattcattccacacattttttacc 29132588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 28266018 - 28266155
Alignment:
Q  9 gtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaatannnnnnng---gtatttggtcagttttt 105  Q
    |||||||||||||| ||||||||| |||||||||||||||||||   |||||||||||  |||||||||| |       |   ||  |||||||||||||    
T  28266018 gtcacgcaccactgacatgtgcgcgagttaactcacgcacgttgatcggtggtcagagacgaagaacaaacattttttggtctgtggttggtcagttttt 28266117  T
Q  106 caacattcaatctaccctttttttacccattatacacg 143  Q
    ||||||||||||| | | ||||||| ||||||||||||    
T  28266118 caacattcaatctccacgttttttatccattatacacg 28266155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 29908506 - 29908583
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    ||||||||||||||| |||||||| | ||||| |||||||||| |||||||||| |||||| ||| ||||||||||||    
T  29908506 tgacttaagtcacgcgccactggcctatgcgcgagttaactcatgcacgttggccggtggttagaactgaagaacaaa 29908583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 4 - 78
Target Start/End: Complemental strand, 6903795 - 6903722
Alignment:
Q  4 cttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    |||||||||||||||||||||  |||||| ||||||||||| ||  ||||| |||||||||| ||||||||||||    
T  6903795 cttaagtcacgcaccactggccggtgcgcgagttaactcacaca-tttggccggtggtcagaactgaagaacaaa 6903722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 12874246 - 12874323
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    |||||||||||||||||||||| | | ||||| ||||||||||||||  |||   |||||| ||||||||||||||||    
T  12874246 tgacttaagtcacgcaccactgacctatgcgcgagttaactcacgcaacttgagcggtggtaagagctgaagaacaaa 12874323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 25686109 - 25686072
Alignment:
Q  28 tgcgcaagttaactcacgcacgttggctggtggtcaga 65  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  25686109 tgcgcgagttaactcacgcacgttggctggtggtcaga 25686072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 8556241 - 8556320
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaata 80  Q
    |||||||||||||||| || || | | ||| | |||| |||||| |||  |||| |||||||||||||||||||||||||    
T  8556241 tgacttaagtcacgcatcaatgccctatgcacgagtttactcacacaccatggccggtggtcagagctgaagaacaaata 8556320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 11713276 - 11713317
Alignment:
Q  156 acattaatagtgtttataacctatactaccattctcacctat 197  Q
    |||||||| ||||||| ||||||||||||||||| |||||||    
T  11713276 acattaatggtgtttacaacctatactaccattcccacctat 11713317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 13785051 - 13785124
Alignment:
Q  5 ttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    ||||||||||||||| |||| |  | || ||||||||||||||||||||| | ||||| ||||| | |||||||    
T  13785051 ttaagtcacgcaccattggcctaagtgcgagttaactcacgcacgttggccgatggtctgagctcatgaacaaa 13785124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 18844061 - 18843986
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaaca 76  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||| ||||| ||||||||||    
T  18844061 tgacttaagtcacacaccactggtatgtgcgcaagttaactcacgcacgttggccggtgatcagaactgaagaaca 18843986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 3660260 - 3660183
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    ||||||||||||||||||| |||| | ||||| ||||||||||||||| ||||| |||||||||||||||||||||||    
T  3660260 tgacttaagtcacgcaccattggcctatgcgcgagttaactcacgcaccttggccggtggtcagagctgaagaacaaa 3660183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 48566761 - 48566838
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    ||||||||||||||||  |||||| | ||||| |||||||||||||||||||||||||||||||| ||||||||||||    
T  48566761 tgacttaagtcacgcattactggcctatgcgcgagttaactcacgcacgttggctggtggtcagaactgaagaacaaa 48566838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 21482909 - 21482986
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    ||||||||||||||||||||| || | ||| | ||||||||||||||||||||| | |||||||||||||||||||||    
T  21482909 tgacttaagtcacgcaccactagcctatgcacgagttaactcacgcacgttggccgatggtcagagctgaagaacaaa 21482986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 41871736 - 41871813
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    |||||||||| ||||||||||||| | ||||| ||||||||||||||||||||| |||||| ||| ||||||||||||    
T  41871736 tgacttaagtaacgcaccactggcctatgcgcgagttaactcacgcacgttggccggtggtaagaactgaagaacaaa 41871813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 49597196 - 49597273
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    |||||||||||||||||||||||| | ||||| ||||||||||||||||||||  |||||||||| || |||||||||    
T  49597196 tgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcacgttggtcggtggtcagaactaaagaacaaa 49597273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 47983689 - 47983760
Alignment:
Q  5 ttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaaca 76  Q
    |||||||||  ||||||||||||||||| |||||||| |||||||||||| |||||||||| || |||||||    
T  47983689 ttaagtcacttaccactggcatgtgcgcgagttaactgacgcacgttggccggtggtcagaactaaagaaca 47983760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 39222706 - 39222783
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    ||||||||||||||||||| |||| | ||| | |||||||||||||||  |||  |||||||||||||||||||||||    
T  39222706 tgacttaagtcacgcaccaatggcctatgcacgagttaactcacgcaccatggtcggtggtcagagctgaagaacaaa 39222783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 46923781 - 46923858
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    ||||||||||||||||||| |||| | ||||| |||||||||||||||  || | ||||||||||| |||||||||||    
T  46923781 tgacttaagtcacgcaccaatggcctatgcgcgagttaactcacgcaccatgtccggtggtcagagatgaagaacaaa 46923858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 5770642 - 5770578
Alignment:
Q  4 cttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagct 68  Q
    ||||||||||||||||||||| ||||||| || ||||||||||| | |||| |||||| ||||||    
T  5770642 cttaagtcacgcaccactggcctgtgcgcgagctaactcacgcaaggtggccggtggttagagct 5770578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 10308477 - 10308537
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggt 61  Q
    |||||||||||||||||||||||||||||||  ||||||||  |||| |||||| ||||||    
T  10308477 tgacttaagtcacgcaccactggcatgtgcgtgagttaacttgcgcaagttggccggtggt 10308537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 5766903 - 5766863
Alignment:
Q  4 cttaagtcacgcaccactggcatgtgcgcaagttaactcac 44  Q
    ||||||||||||||||||||| ||||||| |||||||||||    
T  5766903 cttaagtcacgcaccactggcctgtgcgcgagttaactcac 5766863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 18178921 - 18178973
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttgg 53  Q
    |||||||||||| ||| ||||| |||| ||||||||||||||||||| |||||    
T  18178921 tgacttaagtcatgcatcactgacatgagcgcaagttaactcacgcaggttgg 18178973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 46178671 - 46178721
Alignment:
Q  28 tgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    ||||| |||||||||||||| |||| | |||||||||| ||||||||||||    
T  46178671 tgcgcgagttaactcacgcatgttgaccggtggtcagaactgaagaacaaa 46178721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 1671408 - 1671331
Alignment:
Q  2 gacttaagtcacgcaccactg-gcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    ||||||||||||| ||||||| || | ||||| ||||||| |||||| |||||  |||||||| | ||||||||||||    
T  1671408 gacttaagtcacgaaccactgagcctctgcgcgagttaacgcacgcaagttggtcggtggtcaaaactgaagaacaaa 1671331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 11012143 - 11012216
Alignment:
Q  5 ttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    ||||||| | |||||||||| || |||  ||||||||||||||||||||| ||||||  ||||| | |||||||    
T  11012143 ttaagtcgcacaccactggcctgggcgtgagttaactcacgcacgttggccggtggtatgagctcatgaacaaa 11012216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 23603040 - 23602987
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggc 54  Q
    ||||||||||||||||| ||| || ||||||| ||||||||| |||| ||||||    
T  23603040 tgacttaagtcacgcacaactagcttgtgcgcgagttaactcgcgcaggttggc 23602987  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 26013762 - 26013689
Alignment:
Q  5 ttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    ||||||||||||||||||   |||||||  |||||||| || |||||  | |||||||||| ||||||||||||    
T  26013762 ttaagtcacgcaccactgatctgtgcgcgggttaactcgcgtacgttacccggtggtcagaactgaagaacaaa 26013689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 47485706 - 47485747
Alignment:
Q  156 acattaatagtgtttataacctatactaccattctcacctat 197  Q
    |||||||| ||||||| ||||||||||||||||| |||||||    
T  47485706 acattaatggtgtttacaacctatactaccattcccacctat 47485747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 50065781 - 50065822
Alignment:
Q  156 acattaatagtgtttataacctatactaccattctcacctat 197  Q
    |||||||| ||||||| ||||||||||||||||| |||||||    
T  50065781 acattaatggtgtttacaacctatactaccattcccacctat 50065822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 78
Target Start/End: Original strand, 30858534 - 30858578
Alignment:
Q  34 agttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    ||||||||| |||| |||||| |||||||| ||||||||||||||    
T  30858534 agttaactcgcgcaagttggccggtggtcaaagctgaagaacaaa 30858578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 3e-22; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 10532800 - 10532873
Alignment:
Q  5 ttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    |||||||| ||||||||||| ||||||| |||||||||||||| |||||| |||||||||||||||||||||||    
T  10532800 ttaagtcatgcaccactggcttgtgcgcgagttaactcacgcaagttggccggtggtcagagctgaagaacaaa 10532873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 6427287 - 6427364
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    ||||||||||||||||| |||||| | ||||| ||||||||||||||| ||||| |||| | ||||||||||||||||    
T  6427287 tgacttaagtcacgcacaactggcctatgcgcgagttaactcacgcaccttggccggtgattagagctgaagaacaaa 6427364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 41758795 - 41758718
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    |||||| |||||||||||| || | | ||||| |||||||||| ||||||||||||||||||||| ||||||||||||    
T  41758795 tgacttgagtcacgcaccattgacctatgcgcgagttaactcatgcacgttggctggtggtcagaactgaagaacaaa 41758718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 7084055 - 7083976
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaata 80  Q
    ||||||||||||||||| | |||| | ||||| |||||||||| |||| ||||| ||||||||||||||||| |||||||    
T  7084055 tgacttaagtcacgcactaatggcctatgcgcgagttaactcatgcaccttggccggtggtcagagctgaaggacaaata 7083976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 1173019 - 1172942
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    |||||||||| ||||||||||||| | ||||| ||||||||||||||| ||||  | |||| ||||||||||||||||    
T  1173019 tgacttaagttacgcaccactggcctatgcgccagttaactcacgcaccttggtcgatggttagagctgaagaacaaa 1172942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 28784853 - 28784776
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    ||||||||||||| | |||||||| || | || ||||||||||||||||||||  |||||||||| ||||||||||||    
T  28784853 tgacttaagtcacaccccactggcctgggtgcgagttaactcacgcacgttggtcggtggtcagaactgaagaacaaa 28784776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 16100884 - 16100942
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtg 59  Q
    ||||||||||||||||||| | || ||||||| |||||||||||||| |||||| ||||    
T  16100884 tgacttaagtcacgcaccatttgcctgtgcgcgagttaactcacgcaagttggccggtg 16100942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 10399343 - 10399270
Alignment:
Q  5 ttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    |||||||| | |||||| || ||||||| |||||||||| ||||||| || |||||||| | ||||||||||||    
T  10399343 ttaagtcatgtaccactagcttgtgcgcgagttaactcatgcacgtttgccggtggtcaaaactgaagaacaaa 10399270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 11125868 - 11125823
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgc 46  Q
    |||||||||||| ||| ||||||||||||||| |||||||||||||    
T  11125868 tgacttaagtcatgcatcactggcatgtgcgcgagttaactcacgc 11125823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 19043889 - 19043964
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaaca 76  Q
    ||||||||||||| ||||| || | || |||| |||||||||| ||| ||||||||||||||  |||| |||||||    
T  19043889 tgacttaagtcacacaccattgacttgggcgcgagttaactcatgcaggttggctggtggtctaagctcaagaaca 19043964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 1172865 - 1172824
Alignment:
Q  156 acattaatagtgtttataacctatactaccattctcacctat 197  Q
    |||||||| ||||||| ||||||||||||||||| |||||||    
T  1172865 acattaatggtgtttacaacctatactaccattcccacctat 1172824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 1974473 - 1974514
Alignment:
Q  156 acattaatagtgtttataacctatactaccattctcacctat 197  Q
    |||||||| ||||||| ||||||||||||||||| |||||||    
T  1974473 acattaatggtgtttacaacctatactaccattcccacctat 1974514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 3461343 - 3461302
Alignment:
Q  156 acattaatagtgtttataacctatactaccattctcacctat 197  Q
    |||||||| ||||||| ||||||||||||||||| |||||||    
T  3461343 acattaatggtgtttacaacctatactaccattcccacctat 3461302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 10532929 - 10532970
Alignment:
Q  156 acattaatagtgtttataacctatactaccattctcacctat 197  Q
    |||||||| || ||||||||||||||||||||| ||||||||    
T  10532929 acattaatggtatttataacctatactaccattttcacctat 10532970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 25898642 - 25898699
Alignment:
Q  5 ttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtc 62  Q
    ||||||||  |||||||||| |  |||  |||||||||||||||||||||||||||||    
T  25898642 ttaagtcatacaccactggcctaggcgtgagttaactcacgcacgttggctggtggtc 25898699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 197
Target Start/End: Complemental strand, 40017113 - 40017072
Alignment:
Q  156 acattaatagtgtttataacctatactaccattctcacctat 197  Q
    |||||||| ||||||| ||||||||||||||||| |||||||    
T  40017113 acattaatggtgtttacaacctatactaccattcccacctat 40017072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 3e-22; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 25574830 - 25574907
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    |||||||||||||||||||||||| | ||||| ||||||||||||||||||||  |||||||||| ||||||||||||    
T  25574830 tgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcacgttggtcggtggtcagaactgaagaacaaa 25574907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 6755798 - 6755723
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaaca 76  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||| |||||| |||||| |||||| |||||||    
T  6755798 tgacttaagtcacacaccactggcatgtgcgcgagttaactcacgcaagttggccggtggttagagctcaagaaca 6755723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 39415349 - 39415426
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    |||||||||||||||||||||||| ||||||  ||||||||||||||||||||| | |||| ||| ||||||||||||    
T  39415349 tgacttaagtcacgcaccactggcctgtgcgtgagttaactcacgcacgttggccgatggttagaactgaagaacaaa 39415426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 48086846 - 48086915
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctga 70  Q
    |||||||||||||||||||||||| | ||||| ||||||||||||||||||||| |||||||||| ||||    
T  48086846 tgacttaagtcacgcaccactggcctatgcgcgagttaactcacgcacgttggccggtggtcagaactga 48086915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 6462999 - 6463077
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaat 79  Q
    ||||||||||||||||||||||||||||| |  |||||||||||||| |||||| |||||| | |||| ||||||||||    
T  6462999 tgacttaagtcacgcaccactggcatgtgtgtgagttaactcacgcaagttggccggtggttaaagctcaagaacaaat 6463077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 143
Target Start/End: Original strand, 8628438 - 8628575
Alignment:
Q  5 ttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaatannnnnnnggtatttggtcagtttt 104  Q
    |||||||||||||||||||   ||| ||||||||||||||||| || ||| |||| ||||| ||||||||||||         | | |||||||||||||    
T  8628438 ttaagtcacgcaccactggttggtgggcaagttaactcacgcaggt-ggccggtgatcagaactgaagaacaaaggatttttag-tctttggtcagtttt 8628535  T
Q  105 tcaacattcaatctac-cctttttttacccattatacacg 143  Q
    |||||||||||||||| | |||||||| ||||||||||||    
T  8628536 tcaacattcaatctacacgtttttttatccattatacacg 8628575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 50561447 - 50561520
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaa 74  Q
    |||||||||||| |||||||| || ||||||| |||||||||||||  |||||  ||||||| ||||| |||||    
T  50561447 tgacttaagtcatgcaccacttgcctgtgcgcgagttaactcacgcgggttggtcggtggtctgagctcaagaa 50561520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 35485563 - 35485604
Alignment:
Q  156 acattaatagtgtttataacctatactaccattctcacctat 197  Q
    |||||||| ||||||| ||||||||||||||||| |||||||    
T  35485563 acattaatggtgtttacaacctatactaccattcccacctat 35485604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 42947682 - 42947723
Alignment:
Q  156 acattaatagtgtttataacctatactaccattctcacctat 197  Q
    |||||||| ||||||| ||||||||||||||||| |||||||    
T  42947682 acattaatggtgtttacaacctatactaccattcccacctat 42947723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 53824609 - 53824650
Alignment:
Q  156 acattaatagtgtttataacctatactaccattctcacctat 197  Q
    |||||||| ||||||| ||||||||||||||||| |||||||    
T  53824609 acattaatcgtgtttacaacctatactaccattcccacctat 53824650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 197
Target Start/End: Complemental strand, 2325375 - 2325331
Alignment:
Q  153 acaacattaatagtgtttataacctatactaccattctcacctat 197  Q
    ||||||||||| ||||||| |||| |||||||||||| |||||||    
T  2325375 acaacattaatggtgtttacaaccaatactaccattcccacctat 2325331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 8e-20; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 319228 - 319305
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    |||||||||||| ||||||||||  | ||||| |||||||||||||||||||| ||||||||||| ||||||||||||    
T  319228 tgacttaagtcatgcaccactggtctatgcgcgagttaactcacgcacgttgggtggtggtcagaactgaagaacaaa 319305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 23912333 - 23912260
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaa 74  Q
    |||||||||||| ||||||||||||||||||| |||||| ||||||| |||||| |||||| |||||| |||||    
T  23912333 tgacttaagtcatgcaccactggcatgtgcgcgagttaattcacgcaagttggccggtggttagagctcaagaa 23912260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 13312590 - 13312667
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    |||||||||||||| ||||||||| || || | |||||||||||| |||||||| | |||||||| ||||||||||||    
T  13312590 tgacttaagtcacgaaccactggcctgggcacgagttaactcacgtacgttggccgatggtcagaactgaagaacaaa 13312667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 62
Target Start/End: Original strand, 17399041 - 17399098
Alignment:
Q  5 ttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtc 62  Q
    ||||||||||||||||||||||||| || |||||||||||||| |||||| |||||||    
T  17399041 ttaagtcacgcaccactggcatgtgtgcgagttaactcacgcaagttggccggtggtc 17399098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 197
Target Start/End: Complemental strand, 11718644 - 11718538
Alignment:
Q  92 tttggtcagtttttcaacattcaatctaccc--tttttttacccattatacacgnnnnnnnnnacaacattaatagtgtttataacctatactaccattc 189  Q
    ||||||||||||||||||||||||||||| |  ||||||||||||||||||| |         || |||||||| || |||||||| |||||||||||||    
T  11718644 tttggtcagtttttcaacattcaatctacacattttttttacccattatacaag-ttttttttaccacattaatggtatttataacttatactaccattc 11718546  T
Q  190 tcacctat 197  Q
    ||||||||    
T  11718545 tcacctat 11718538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 5 - 117
Target Start/End: Original strand, 24173565 - 24173676
Alignment:
Q  5 ttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaatannnnnnnggtatttggtcagtttt 104  Q
    |||||||||||||||||| | |||  ||||||||||||||||| |||||| ||  |||||| |||||||||||| |       | | |||||||||||||    
T  24173565 ttaagtcacgcaccactgacttgtctgcaagttaactcacgcatgttggccggctgtcagaactgaagaacaaaca-ttttttgatctttggtcagtttt 24173663  T
Q  105 tcaacattcaatc 117  Q
    |||||||||||||    
T  24173664 tcaacattcaatc 24173676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 78
Target Start/End: Complemental strand, 2419846 - 2419802
Alignment:
Q  34 agttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    |||||||||||||| |||||| |||||||||| ||||||||||||    
T  2419846 agttaactcacgcaagttggccggtggtcagaactgaagaacaaa 2419802  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 9521416 - 9521462
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgca 47  Q
    |||||||||||||||||||||||||||| ||| | ||||||| ||||    
T  9521416 tgacttaagtcacgcaccactggcatgttcgcgacttaactcccgca 9521462  T

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Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 11718716 - 11718663
Alignment:
Q  25 atgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    ||||||||||||||||||||||||||||||   ||||  |||||||| ||||||    
T  11718716 atgtgcgcaagttaactcacgcacgttggccaatggttggagctgaataacaaa 11718663  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 16444584 - 16444625
Alignment:
Q  156 acattaatagtgtttataacctatactaccattctcacctat 197  Q
    |||||||| ||||||| ||||||||||||||||| |||||||    
T  16444584 acattaatggtgtttacaacctatactaccattcccacctat 16444625  T

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Target: scaffold0861 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0861
Description:

Target: scaffold0861; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 3808 - 3731
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    ||||||||||||| |||||||||| | ||||| ||||||||||||||| ||||| |||||||| |||| |||||||||    
T  3808 tgacttaagtcacacaccactggcctatgcgcgagttaactcacgcaccttggccggtggtcaaagctaaagaacaaa 3731  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 23542826 - 23542749
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    |||||||| ||||||||||||||| | ||||| |||||||||| |||||||||  |||||||||| ||||||||||||    
T  23542826 tgacttaattcacgcaccactggcctatgcgcgagttaactcatgcacgttggtcggtggtcagaactgaagaacaaa 23542749  T

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Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 34471675 - 34471599
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    ||||||||||||||||||| |||| | ||||| ||||||||||||||||||||| |||||| ||| ||||||||||||    
T  34471675 tgacttaagtcacgcaccattggc-tatgcgcgagttaactcacgcacgttggccggtggttagaactgaagaacaaa 34471599  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 43693648 - 43693571
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    |||||||| |||||||||| |||| | ||||| ||| |||||||||||  |||| |||||||||||||||||||||||    
T  43693648 tgacttaattcacgcaccaatggcttatgcgcgagtaaactcacgcaccatggccggtggtcagagctgaagaacaaa 43693571  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 3964017 - 3964087
Alignment:
Q  5 ttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaaca 76  Q
    |||||||||||| ||||| | ||| ||| |||||||||||||| |||||| |||||| |||||| |||||||    
T  3964017 ttaagtcacgcatcactgtc-tgtccgcgagttaactcacgcaagttggccggtggttagagctcaagaaca 3964087  T

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Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 158 - 197
Target Start/End: Original strand, 28704162 - 28704201
Alignment:
Q  158 attaatagtgtttataacctatactaccattctcacctat 197  Q
    |||||| ||||||||||||||||||||||||| |||||||    
T  28704162 attaatggtgtttataacctatactaccattcccacctat 28704201  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 197
Target Start/End: Original strand, 43635426 - 43635467
Alignment:
Q  156 acattaatagtgtttataacctatactaccattctcacctat 197  Q
    |||||||| ||||||| ||||||||||||||||| |||||||    
T  43635426 acattaatggtgtttacaacctatactaccattcccacctat 43635467  T

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Target: scaffold0753 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 4002 - 4080
Alignment:
Q  1 tgacttaagtcacgcaccactg-gcatgtgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    |||||||||||||||||||||| || | | ||| |||||||||||||| |||| | |||||||||| ||||||||||||    
T  4002 tgacttaagtcacgcaccactgagcctttccgcgagttaactcacgcaagttgaccggtggtcagaactgaagaacaaa 4080  T

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Target: scaffold0217 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 28 - 78
Target Start/End: Original strand, 25630 - 25680
Alignment:
Q  28 tgcgcaagttaactcacgcacgttggctggtggtcagagctgaagaacaaa 78  Q
    ||||| |||||||||||||| |||||| |||||||||| ||||||||||||    
T  25630 tgcgcgagttaactcacgcaagttggccggtggtcagaactgaagaacaaa 25680  T

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Target: scaffold0223 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 16166 - 16098
Alignment:
Q  1 tgacttaagtcacgcaccactggcatgtgcgcaagttaactcacgcacgttggctgg-tggtcagagct 68  Q
    ||||||||||||||| ||| |||| |||||||  ||||||||||||| |||||| || |||||||||||    
T  16166 tgacttaagtcacgctccagtggcctgtgcgcgtgttaactcacgcaggttggccggttggtcagagct 16098  T

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