View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19997_high_3 (Length: 520)
Name: NF19997_high_3
Description: NF19997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19997_high_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 18 - 520
Target Start/End: Complemental strand, 3584226 - 3583720
Alignment:
| Q |
18 |
actatgtatacaggttcttaatgaagccaatcttacgaatgccattctttctagaacagtcctcacacggagtgaccttggaggcgccatcattgaaggc |
117 |
Q |
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| T |
3584226 |
actatgtatacaggttcttaatgaagccaatcttacgaatgccattctttctagaacagtcctcacgcggagtgaccttggaggcgccatcattgaaggc |
3584127 |
T |
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| Q |
118 |
gctgattttagtgatgccgtgttggaccttccccaaaaactggtacgaccactgattgcttcaaacactaatcaaatcttagtattcgagcttccacatg |
217 |
Q |
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| T |
3584126 |
gctgattttagtgatgccgtgttggaccttccccaaaaactggtacgaccactgattgcttcaaacactaatcaaatcttagtattcgagcttccacatg |
3584027 |
T |
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| Q |
218 |
atagggtcatggtctgattgcgtagaat----gtgtttcaatgtggtcaaaatgctttcttggcgtagaatttattgagcttatgactgagaattacata |
313 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3584026 |
atagggtcatggtcagattgcgtagaattaatgtgtttcaatgtggtcaaaatgctttcttggcgtagaatttattgagcttatgactgagaattacata |
3583927 |
T |
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| Q |
314 |
tattatttgactgattatgtaggctttatgcaagtatgctagtggcacaaatcctgtaacaggagtaagcacaagagtgagtttaggttgcggaaacaaa |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3583926 |
tattatttgactgattatgtaggctttatgcaagtatgctagtggcacaaatcctgtaacaggagtaagcacaagagtgagtttaggttgcggaaacaaa |
3583827 |
T |
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| Q |
414 |
cgacgaaatgcttatggcaccccatcatctccattgttgagtgctccaccacagaaactactagaccgggatggtttctgtgatgaagcatcaggccttt |
513 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3583826 |
cgacgaaatgcttatggcaccccatcatctccattgttgagtgctccaccacagaaactactagaccgggatggtttctgtgatgaagcatcaggccttt |
3583727 |
T |
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| Q |
514 |
gcgactc |
520 |
Q |
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| T |
3583726 |
gcgactc |
3583720 |
T |
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