View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19997_high_6 (Length: 381)
Name: NF19997_high_6
Description: NF19997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19997_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 368
Target Start/End: Complemental strand, 37957990 - 37957640
Alignment:
| Q |
18 |
tgttgctcctcaagtcgcagagtgttcgtctcataggaatatggggcatgggagggacaggcaaaacaacaattgccagtgcaatctatcataaactcgc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957990 |
tgttgctcctcaagtcgcagagtgttcgtctcataggaatatggggcatgggagggacaggcaaaacaacaattgccagtgcaatctatcataaactcgc |
37957891 |
T |
|
| Q |
118 |
aactcagttcagttccagaagcatcgttctaaatgtgaaacaagaaatagaaagagctggactagaccatgtacgaagaaaatacttatcagaacttcta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957890 |
aactcagttcagttccagaagcatcgttctaaatgtgaaacaagaaatcgaaagagctggactagaccatgtacgaagaaaatacttatcagaacttcta |
37957791 |
T |
|
| Q |
218 |
gatgaagacattacatcctctaaatccaatttttcatttgatccaaggctcaaacggacaaagattctccttgttcttgatgatgtgaaagattctgatc |
317 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957790 |
gatgaagacattacatcctctaaatccaatttttcatttgatccaaggctcaaacggacaaagattctccttgttcttgatgatgtgaaagattctgatc |
37957691 |
T |
|
| Q |
318 |
aacttgaagatttaattggaacacatcatagtaactttggccaagggagta |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957690 |
aacttgaagatttaattggaacacatcatagtaactttggccaagggagta |
37957640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 37929597 - 37929915
Alignment:
| Q |
18 |
tgttgctcctcaagtcgcagagtgttcgtctcataggaatatggggcatgggagggacaggcaaaacaacaattgccagtgcaatctatcataaactcgc |
117 |
Q |
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||||||||||| ||||| | |||||| ||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||| || || | |
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| T |
37929597 |
tgttgctcctcgagtcggctactgttcgaatcataggaatacggggcatgggagggataggcaaaacaacaattgccaatgcaatctatcatcaattctc |
37929696 |
T |
|
| Q |
118 |
aactcagttcagttccagaagcatcgttctaaatgtgaaacaagaaatagaaagagctggactagaccatgtacgaagaaaatacttatcagaacttcta |
217 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||| |
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| T |
37929697 |
aactcagttcagttccaaaagcatcattctaaatgctcaacaagaaatagaaagagctggactacgccatgtacaaagaaaatacttatcacaacttcta |
37929796 |
T |
|
| Q |
218 |
gatgaagacattacatcctctaaatccaatttttcatttgatccaaggctcaaacggacaaagattctccttgttcttgatgatgtgaaagattctgatc |
317 |
Q |
| |
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|| |||||||||||||||||| || ||| ||||||| ||||||||| |||| |||| ||||||||||||||||||| ||||| ||||| |||| |
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| T |
37929797 |
gaggaagacattacatcctctggattcaagttttcatacattccaaggcttcaacgaggaaaggttctccttgttcttgatgacgtgaacgattcagatc |
37929896 |
T |
|
| Q |
318 |
aacttgaagatttaattgg |
336 |
Q |
| |
|
||||||||| ||||||||| |
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|
| T |
37929897 |
aacttgaaggtttaattgg |
37929915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 51 - 338
Target Start/End: Complemental strand, 44644770 - 44644483
Alignment:
| Q |
51 |
taggaatatggggcatgggagggacaggcaaaacaacaattgccagtgcaatctatcataaactcgcaactcagttcagttccagaagcatcgttctaaa |
150 |
Q |
| |
|
||||||| ||||| |||||||| | ||| |||||||||||||| |||||||| |||| ||| | ||||| || ||||||| | |||||| | ||||| |
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| T |
44644770 |
taggaatctggggtatgggaggaatagggaaaacaacaattgctagtgcaatatatcgcaaattggcaacccaattcagttttaacagcatcatcctaaa |
44644671 |
T |
|
| Q |
151 |
tgtgaaacaagaaatagaaagagctggactagaccatgtacgaagaaaatacttatcagaacttctagatgaagacattacatcctctaaatccaatttt |
250 |
Q |
| |
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||| ||||||||||||| ||| |||||| ||||| ||| ||| ||||| || || ||||| | ||| ||| ||||||||| || | || |
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| T |
44644670 |
tgttcaacaagaaatagagagatttggactgcaccatatacaaagcaaatatagatttgagcttctgggagaaaacaacacatcctctggattatgtctt |
44644571 |
T |
|
| Q |
251 |
tcatttgatccaaggctcaaacggacaaagattctccttgttcttgatgatgtgaaagattctgatcaacttgaagatttaattggaa |
338 |
Q |
| |
|
|||||||||| |||||||||| |||| ||| ||||||||||||||||||||| || |||| ||||||||| |||||||||||||| |
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|
| T |
44644570 |
tcatttgatcaaaggctcaaatggactaaggctctccttgttcttgatgatgttaacaattcggatcaacttagagatttaattggaa |
44644483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 181
Target Start/End: Original strand, 25721218 - 25721351
Alignment:
| Q |
48 |
tcataggaatatggggcatgggagggacaggcaaaacaacaattgccagtgcaatctatcataaactcgcaactcagttcagttccagaagcatcgttct |
147 |
Q |
| |
|
|||||||||| ||||| |||||||| | ||||||||| ||||||| ||||||| ||||| | | |||||||| |||| ||| || ||||| | || |
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| T |
25721218 |
tcataggaatttggggtatgggaggaataggcaaaaccgaaattgcccgtgcaatatatcacaggtttgcaactcaattcaattctagcagcatgatact |
25721317 |
T |
|
| Q |
148 |
aaatgtgaaacaagaaatagaaagagctggacta |
181 |
Q |
| |
|
|||||| ||||||||||| |||||| ||||||| |
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| T |
25721318 |
aaatgttgaacaagaaataaaaagagttggacta |
25721351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 34727887 - 34727847
Alignment:
| Q |
53 |
ggaatatggggcatgggagggacaggcaaaacaacaattgc |
93 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
34727887 |
ggaatatggggcatgggagggatcggcaaaacaacaattgc |
34727847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 93
Target Start/End: Complemental strand, 34731045 - 34731005
Alignment:
| Q |
53 |
ggaatatggggcatgggagggacaggcaaaacaacaattgc |
93 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
34731045 |
ggaatatggggcatgggagggatcggcaaaacaacaattgc |
34731005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 93
Target Start/End: Original strand, 18928839 - 18928879
Alignment:
| Q |
53 |
ggaatatggggcatgggagggacaggcaaaacaacaattgc |
93 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||| |
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|
| T |
18928839 |
ggaatatggggtatgggagggatcggcaaaacaacaattgc |
18928879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 93
Target Start/End: Complemental strand, 34735640 - 34735604
Alignment:
| Q |
57 |
tatggggcatgggagggacaggcaaaacaacaattgc |
93 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34735640 |
tatggggcatgggagggatcggcaaaacaacaattgc |
34735604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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