View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19997_high_9 (Length: 268)

Name: NF19997_high_9
Description: NF19997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19997_high_9
NF19997_high_9
[»] chr6 (14 HSPs)
chr6 (1-252)||(2937546-2937797)
chr6 (3-252)||(2974093-2974342)
chr6 (1-252)||(2964595-2964846)
chr6 (1-252)||(3003525-3003770)
chr6 (6-252)||(2952025-2952265)
chr6 (1-252)||(2934685-2934936)
chr6 (1-252)||(2982949-2983203)
chr6 (1-180)||(2929467-2929646)
chr6 (1-195)||(2927303-2927497)
chr6 (1-252)||(2658726-2658983)
chr6 (9-190)||(2997122-2997303)
chr6 (34-177)||(2978408-2978550)
chr6 (211-252)||(2927243-2927284)
chr6 (72-133)||(2954546-2954607)
[»] scaffold0024 (3 HSPs)
scaffold0024 (1-252)||(34983-35234)
scaffold0024 (72-133)||(44743-44804)
scaffold0024 (137-177)||(45128-45168)
[»] chr7 (1 HSPs)
chr7 (1-176)||(3339187-3339362)
[»] chr3 (2 HSPs)
chr3 (6-189)||(49613585-49613768)
chr3 (26-173)||(49618589-49618735)


Alignment Details
Target: chr6 (Bit Score: 164; Significance: 1e-87; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 2937797 - 2937546
Alignment:
Q  1 tcataagggtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccg 100  Q
    |||| |||||||||||||||||||||||||| |||||||| ||| |||  ||||||   |||| |||||  ||||||||||||||||||||||||||| |    
T  2937797 tcatgagggtaatgacactgctccaaagcaaccatattccaaaacaaaatttcggtcgaatcctcaactgttaattgaggaatttcaagaactcctcctg 2937698  T
Q  101 aaaatctcaagtcatgtaaatactcacttttagtattcactttaaacctaactccagcttctaacaactcagttgcactcggtaaatgtattatctgttc 200  Q
    |||||||||||||| ||||| | | ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2937697 aaaatctcaagtcaagtaaacaattactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgtattatctgttc 2937598  T
Q  201 gtcgatcgcttctctactcggtcgactttcaataggatgtttcaaatgaaat 252  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  2937597 gtcgatcgcttctctactcggccgactttcaataggatgttgcaaatgaaat 2937546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 3 - 252
Target Start/End: Complemental strand, 2974342 - 2974093
Alignment:
Q  3 ataagggtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccgaa 102  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||  |||||| |||||   ||||  |||||||||||||||||||||||||||||||    
T  2974342 ataagggtaatgacactgctccaaagcaaccatattccgaaacaaaatttcggtcccatcttgaactgttaattgaggaatttcaagaactcctcccgaa 2974243  T
Q  103 aatctcaagtcatgtaaatactcacttttagtattcactttaaacctaactccagcttctaacaactcagttgcactcggtaaatgtattatctgttcgt 202  Q
    || ||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |    
T  2974242 aacctcaagtcatgtaaacattcacttttagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgtattatttgttcat 2974143  T
Q  203 cgatcgcttctctactcggtcgactttcaataggatgtttcaaatgaaat 252  Q
    |||||   ||||||||||| | ||||||||||||||||||||||||||||    
T  2974142 cgatctgctctctactcggcctactttcaataggatgtttcaaatgaaat 2974093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 2964846 - 2964595
Alignment:
Q  1 tcataagggtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccg 100  Q
    |||||||||||| |||||||||||||||||| |||||||||||| | |  |||||| |||||   | ||| |||||||||||||||||||||||||||||    
T  2964846 tcataagggtaacgacactgctccaaagcaaccatattccgaaacataatttcggtcccatcgtgagctattaattgaggaatttcaagaactcctcccg 2964747  T
Q  101 aaaatctcaagtcatgtaaatactcacttttagtattcactttaaacctaactccagcttctaacaactcagttgcactcggtaaatgtattatctgttc 200  Q
    |||| ||||||||| ||||| ||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||     
T  2964746 aaaacctcaagtcaagtaaacacttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactaggtagatgtattatctgttt 2964647  T
Q  201 gtcgatcgcttctctactcggtcgactttcaataggatgtttcaaatgaaat 252  Q
    || |||    ||||||||||| ||| ||||||||||||||| ||||||||||    
T  2964646 gttgatgttgtctctactcggccgattttcaataggatgttgcaaatgaaat 2964595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 3003525 - 3003770
Alignment:
Q  1 tcataagggtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccg 100  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||   |||| ||||||||||||||||||||||||||||||||||||    
T  3003525 tcatcagggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggtcgaatccgcaactaataattgaggaatttcaagaactcctcccg 3003624  T
Q  101 aaaatctcaagtcatgtaaatactcacttttagtattcactttaaacctaactccagcttctaacaactcagttgcactcggtaaatgtattatctgttc 200  Q
    |||| ||||||||| ||||| ||| ||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||  |||| | |||  |||    
T  3003625 aaaacctcaagtcaagtaaacacttactttcagtgttcactttaaatctaactccagcttctaacaactcagttgcactcggtggatgtttcatccattc 3003724  T
Q  201 gtcgatcgcttctctactcggtcgactttcaataggatgtttcaaatgaaat 252  Q
       ||      |||||||||| ||||||||||||||||||| ||||||||||    
T  3003725 tctga------ctctactcggccgactttcaataggatgttgcaaatgaaat 3003770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 6 - 252
Target Start/End: Complemental strand, 2952265 - 2952025
Alignment:
Q  6 agggtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccgaaaat 105  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||   ||||  ||||  ||||||||||||||||||||||||| |||||||     
T  2952265 agggtaatgacactgctccaaagcaaccatattccgaaataaagtttcggttgaatcctgaacttttaattgaggaatttcaagaactccttccgaaaac 2952166  T
Q  106 ctcaagtcatgtaaatactcacttttagtattcactttaaacctaactccagcttctaacaactcagttgcactcggtaaatgtattatctgttcgtcga 205  Q
    ||||||||| ||||| ||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||  |||  | |    
T  2952165 ctcaagtcaagtaaacacttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatccattctacaa 2952066  T
Q  206 tcgcttctctactcggtcgactttcaataggatgtttcaaatgaaat 252  Q
          |||||||||| ||||||||||||||||||| ||||||||||    
T  2952065 ------ctctactcggccgactttcaataggatgttgcaaatgaaat 2952025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 2934936 - 2934685
Alignment:
Q  1 tcataagggtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccg 100  Q
    |||| |||||||||||||||||||||||||| |||||| |||||  ||  ||| || | |||  ||||   |||||||||||||||||||||||||||||    
T  2934936 tcatcagggtaatgacactgctccaaagcaaccatatttcgaaacgaaatttcagtcctatcgtcaaccgttaattgaggaatttcaagaactcctcccg 2934837  T
Q  101 aaaatctcaagtcatgtaaatactcacttttagtattcactttaaacctaactccagcttctaacaactcagttgcactcggtaaatgtattatctgttc 200  Q
    |||| ||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||  |||| |  |||  |||||||    
T  2934836 aaaacctcaagtcaagtaaacacttacttttagtattcactttaaacctaactccagcttctaacaattcagttgcaccgggtagacttatcttctgttc 2934737  T
Q  201 gtcgatcgcttctctactcggtcgactttcaataggatgtttcaaatgaaat 252  Q
    ||||| |   ||||||||||| ||||||||||||||||||| ||||||||||    
T  2934736 gtcgaacatgtctctactcggccgactttcaataggatgttgcaaatgaaat 2934685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 2983203 - 2982949
Alignment:
Q  1 tcataagggtaatgacactgctccaaagcaatcatattccgaaataaagattcggtg---ccatccccaactaataattgaggaatttcaagaactcctc 97  Q
    |||| |||||||||||| |||||||||||||||||||||||||| |||  ||||||    | |||   ||||| ||||||||||||||||||||||||||    
T  2983203 tcatgagggtaatgacaatgctccaaagcaatcatattccgaaacaaaatttcggtcgtccgatcatgaactattaattgaggaatttcaagaactcctc 2983104  T
Q  98 ccgaaaatctcaagtcatgtaaatactcacttttagtattcactttaaacctaactccagcttctaacaactcagttgcactcggtaaatgtattatctg 197  Q
    ||||||| |||||||||| |||| ||| ||||||||| ||||||| |||||||||||||||||||| ||||| ||||||| || ||| |||||||||| |    
T  2983103 ccgaaaacctcaagtcatataaacacttacttttagttttcacttgaaacctaactccagcttctaccaactgagttgcagtctgtatatgtattatccg 2983004  T
Q  198 ttcgtcgatcgcttctctactcggtcgactttcaataggatgtttcaaatgaaat 252  Q
    ||  ||||||    |||||||||| ||||||||||||||||||| ||||||||||    
T  2983003 tttttcgatcttgactctactcggccgactttcaataggatgttgcaaatgaaat 2982949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 2929646 - 2929467
Alignment:
Q  1 tcataagggtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccg 100  Q
    |||| |||||||||| |||||||||||||||||||||||| |||||||| |||||| |||||  |||||  ||||||||||||||||||||||||||| |    
T  2929646 tcatgagggtaatgaaactgctccaaagcaatcatattccaaaataaagtttcggtcccatctgcaactgttaattgaggaatttcaagaactcctcctg 2929547  T
Q  101 aaaatctcaagtcatgtaaatactcacttttagtattcactttaaacctaactccagcttctaacaactcagttgcactc 180  Q
    |||| || |||||| ||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2929546 aaaaccttaagtcaagtaaacacttacttttagtgttcactttaaacctaactccagcttctaacaactcagttgcactc 2929467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 2927497 - 2927303
Alignment:
Q  1 tcataagggtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccg 100  Q
    |||| |||||||||||||||||||||||||| ||||||||| ||||||| ||| ||   ||||  ||||  |||||||||||||||||||||||||||||    
T  2927497 tcatcagggtaatgacactgctccaaagcaaccatattccgtaataaagtttcagtcgaatcctgaacttttaattgaggaatttcaagaactcctcccg 2927398  T
Q  101 aaaatctcaagtcatgtaaatactcacttttagtattcactttaaacctaactccagcttctaacaactcagttgcactcggtaaatgtattatc 195  Q
    |||| ||||||||| ||||| ||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||    
T  2927397 aaaacctcaagtcaagtaaacacttactttcagtgttcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgttttatc 2927303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 2658726 - 2658983
Alignment:
Q  1 tcataagggtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccg 100  Q
    ||||||||||||||||| ||||||||||||| |||||| ||||| |||  ||| || | |||  ||||   ||||||||||||||||||||||||||| |    
T  2658726 tcataagggtaatgacattgctccaaagcaaccatatttcgaaacaaaatttcagtcctatcgtcaaccgttaattgaggaatttcaagaactcctcctg 2658825  T
Q  101 a------aaatctcaagtcatgtaaatactcacttttagtattcactttaaacctaactccagcttctaacaactcagttgcactcggtaaatgtattat 194  Q
    |      ||| ||||||||| ||||| ||| |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  2658826 attttgaaaacctcaagtcaagtaaacacttacttttagtgctcactttaaacctaactccagcttctaacaactcagttgcactcggtagatgtatcat 2658925  T
Q  195 ctgttcgtcgatcgcttctctactcggtcgactttcaataggatgtttcaaatgaaat 252  Q
    | |||||||| |||| |   ||||||||||| ||||||||||| ||| ||||||||||    
T  2658926 ccgttcgtcggtcgcgttattactcggtcgaatttcaataggaagttgcaaatgaaat 2658983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 2997122 - 2997303
Alignment:
Q  9 gtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccgaaaatctc 108  Q
    ||||||| ||||||||||||||| ||||||||||||||||| |||||| | |||| |||| | |||   |||||||||||||||| |||||||||| |||    
T  2997122 gtaatgaaactgctccaaagcaaccatattccgaaataaagcttcggtccgatcctcaacaattaacgaaggaatttcaagaacttctcccgaaaacctc 2997221  T
Q  109 aagtcatgtaaatactcacttttagtattcactttaaacctaactccagcttctaacaactcagttgcactcggtaaatgta 190  Q
    |||||| ||||| |||  |||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||| |||||    
T  2997222 aagtcaagtaaacacttgcttttagtgttcactttaaacttaactccagcttctaacaactcagttgcacttggtagatgta 2997303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 2978550 - 2978408
Alignment:
Q  34 atattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccgaaaatctcaagtcatgtaaatactcacttttag 133  Q
    |||| |||||| |||  |||||| |||||| |||||  ||||||||||||||||||||||||||||||||| ||||| ||| ||||| ||||||||||||    
T  2978550 atataccgaaacaaaatttcggtcccatcctcaactcttaattgaggaatttcaagaactcctcccgaaaacctcaaatcaagtaaacactcacttttag 2978451  T
Q  134 tattcactttaaacctaactccagcttctaacaactcagttgca 177  Q
    | |||||||||||||||| ||||||||||||||| |||||||||    
T  2978450 tgttcactttaaacctaa-tccagcttctaacaattcagttgca 2978408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 252
Target Start/End: Complemental strand, 2927284 - 2927243
Alignment:
Q  211 tctctactcggtcgactttcaataggatgtttcaaatgaaat 252  Q
    ||||||||||| ||||||||||||||||||| ||||||||||    
T  2927284 tctctactcggccgactttcaataggatgttgcaaatgaaat 2927243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 133
Target Start/End: Complemental strand, 2954607 - 2954546
Alignment:
Q  72 taattgaggaatttcaagaactcctcccgaaaatctcaagtcatgtaaatactcacttttag 133  Q
    ||||||||||||| ||||||||| |   ||||| ||||||||| ||||| ||||||||||||    
T  2954607 taattgaggaattccaagaactcgttgtgaaaacctcaagtcaagtaaacactcacttttag 2954546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 144; Significance: 9e-76; HSPs: 3)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 34983 - 35234
Alignment:
Q  1 tcataagggtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccg 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||  |||||| |||||| |||||  |||| ||||||||||||| |||||| |||    
T  34983 tcataagggtaatgacactgctccaaagcaaccatattccgaaacaaaatttcggtcccatcctcaacttctaatcgaggaatttcaagcactccttccg 35082  T
Q  101 aaaatctcaagtcatgtaaatactcacttttagtattcactttaaacctaactccagcttctaacaactcagttgcactcggtaaatgtattatctgttc 200  Q
    |||| | ||||||| ||||| ||||||||||||  ||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  35083 aaaaccccaagtcaagtaaacactcacttttaggcttcacttgaaacctaactccagcttctaacaactgagttgcactcggtagatgtattatctgttc 35182  T
Q  201 gtcgatcgcttctctactcggtcgactttcaataggatgtttcaaatgaaat 252  Q
    |||||||   |||||||| ||  |||||||||||||||||| ||||||||||    
T  35183 gtcgatcttgtctctacttggctgactttcaataggatgttgcaaatgaaat 35234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 133
Target Start/End: Original strand, 44743 - 44804
Alignment:
Q  72 taattgaggaatttcaagaactcctcccgaaaatctcaagtcatgtaaatactcacttttag 133  Q
    ||||||||||||||||||||||| | | ||||| ||||| ||| ||||| ||||||||||||    
T  44743 taattgaggaatttcaagaactctttctgaaaacctcaaatcaagtaaacactcacttttag 44804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 177
Target Start/End: Original strand, 45128 - 45168
Alignment:
Q  137 tcactttaaacctaactccagcttctaacaactcagttgca 177  Q
    |||||| |||||||||||||||||||||||||||| |||||    
T  45128 tcacttgaaacctaactccagcttctaacaactcatttgca 45168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 3339362 - 3339187
Alignment:
Q  1 tcataagggtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccg 100  Q
    |||| |||||||||||||||||||||||||| |||||||||||| |||  |||||| |||||  |||||  |||||||||||||||||||||||||||||    
T  3339362 tcatcagggtaatgacactgctccaaagcaaccatattccgaaacaaaatttcggtcccatcgtcaactgttaattgaggaatttcaagaactcctcccg 3339263  T
Q  101 aaaatctcaagtcatgtaaatactcacttttagtattcactttaaacctaactccagcttctaacaactcagttgc 176  Q
    |||| |||||| || ||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  3339262 aaaacctcaagccaagtaaacactcacttttagtgttcactttaaacctaactcctgcttctaacaactcagttgc 3339187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 6 - 189
Target Start/End: Complemental strand, 49613768 - 49613585
Alignment:
Q  6 agggtaatgacactgctccaaagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccgaaaat 105  Q
    |||||| ||||| ||||||||||||| |||||||||||| |||  ||| || | |||| |||||   |||||||||||||||||||| | ||| |||||     
T  49613768 agggtagtgacattgctccaaagcaaccatattccgaaacaaaatttcagtccaatcctcaactttcaattgaggaatttcaagaacccgtcctgaaaac 49613669  T
Q  106 ctcaagtcatgtaaatactcacttttagtattcactttaaacctaactccagcttctaacaactcagttgcactcggtaaatgt 189  Q
    ||||| ||| ||||| ||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||| ||| ||||    
T  49613668 ctcaaatcaagtaaacactcacttttagtgttcactttaaacctcaccccagcttctaacaactcagttgcactctgtagatgt 49613585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 26 - 173
Target Start/End: Complemental strand, 49618735 - 49618589
Alignment:
Q  26 aagcaatcatattccgaaataaagattcggtgccatccccaactaataattgaggaatttcaagaactcctcccgaaaatctcaagtcatgtaaatactc 125  Q
    |||||| |||||||| |||||||| | |||| |  ||| |||||  ||||||||||||||||||||||| ||| ||||| ||||||||| ||||| |       
T  49618735 aagcaaccatattcc-aaataaagttacggtccggtcctcaactcttaattgaggaatttcaagaactcgtccggaaaacctcaagtcaagtaaacatgt 49618637  T
Q  126 acttttagtattcactttaaacctaactccagcttctaacaactcagt 173  Q
    | ||||||| ||||||||||||||||||||||||||||||||||||||    
T  49618636 agttttagtgttcactttaaacctaactccagcttctaacaactcagt 49618589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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