View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19997_low_1 (Length: 918)
Name: NF19997_low_1
Description: NF19997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19997_low_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 705; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 705; E-Value: 0
Query Start/End: Original strand, 19 - 901
Target Start/End: Original strand, 34995089 - 34995959
Alignment:
| Q |
19 |
atcggggttaggaattgttcctaggatttaattgtgttgcattaattgatgttattatattataannnnnnnnncttt--catgttttgttatttattta |
116 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
34995089 |
atcggggttaggaattgttcctaggatttaattgtggtgcattaattgatgttattatattataatttgtttttttttttcatgttttgttatttattta |
34995188 |
T |
|
| Q |
117 |
tagttatggttgaacattcagttcgtagttatgttgagtcaaaataaaatattgttgagtcttccgataaattcaaaccatttattgttgaaacttccct |
216 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34995189 |
tagttatggttgaacattcagttggtagttatgttgagtcaaaataaaatattgttgagtcttccgatgaattcaaaccatttattgttgaaacttccct |
34995288 |
T |
|
| Q |
217 |
cgaattgaaactaaaaattgtcgaaggttccatcgaaatgaaaacaaacattgtcaaagcttccgttcattctaaagacaaaatcgttggttctagtgtt |
316 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34995289 |
cgaattgaaactaaaaattgtcgaagattccgccgaaatgaaaacaaacattgtcaaagcttccgttcattctaaagacaaaatcgttggttctggtgtt |
34995388 |
T |
|
| Q |
317 |
tcaaaacttcgtgataatgattagatatgatgtcttaccttttcatagaagataaatagaaagttagatatgatatgatgtgattagttgggttcgtcaa |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
34995389 |
tcaaaacttcgtgataatgattagatatgatgtcttaccttttcatagaagataaatagaaagttagatatgata-----tgattagttgggttcgtcaa |
34995483 |
T |
|
| Q |
417 |
caagcaataaagaccgaatttacgttaatataaagagttctcatcatcgtcatgaaagaaggtcgccaatgttagtgttggattgtgaaagagatggtat |
516 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||| | | ||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34995484 |
caagcaataaagaccgaatttacgttaatataaagagttctcatctttgccatga---aaggtcgccaatgttagtgttggattgtgaaagagatggtat |
34995580 |
T |
|
| Q |
517 |
gtacagaggaactaagaagaaattaaatcgagaagacatgtgttaaaggaaacgtgaatgtcaatttagattgcgtaattattatttgtcaaaatttaat |
616 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
34995581 |
gtacagaggaactaagaaaaaattaaatcgagaagacacgtgctaaaggaaacgtgaatgtcaatttagattgcgta---attatttgtcaaaatttaat |
34995677 |
T |
|
| Q |
617 |
gaccggtcatttagtattcttaatggagtgcacaatcattcaaatgataaagttagaaggtcaccttcttgctgtagattagccggaaaagacaaggaga |
716 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
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|
| T |
34995678 |
gaccgatcatctagtattcttaatggagtgcacaatcattcaatggataaagttagaaggtcaccttcttgctgtagattagccagaaaaaacaaggaga |
34995777 |
T |
|
| Q |
717 |
ttgttgctcacctcacagggaatatggtggaatctaagaacatcctgatgattttgaaagataaaagaaaagacattttaacaaatataaagcaagttta |
816 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34995778 |
ttgttgctcacctcacagggaatatggtggaatctaagaacatcctgatgattttgaaagataaaagaaaagacattttaacaaatataaagcaagttta |
34995877 |
T |
|
| Q |
817 |
caattgataagtaaagagataaaaatacgtaaataatagcttgagtttgattatttgtgtcttctatgtaaaagatgagtatttg |
901 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34995878 |
caattgataagtaaagagataaaaatacgta---aatagcttgagtttgattatttgtgtcttctatgtaaaagatgagtatttg |
34995959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 178
Target Start/End: Complemental strand, 6569437 - 6569358
Alignment:
| Q |
98 |
atgttttgttatttatttatagttatggttgaacattcagttcgtagttatgttgagtcaaaataaaatattgttgagtct |
178 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| | || || || ||||||||||||| |||||||||||||||| |
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|
| T |
6569437 |
atgttttgttatttatttatagttat-gttgaacatccgattgataattttgttgagtcaaaaacaaatattgttgagtct |
6569358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 405 - 507
Target Start/End: Complemental strand, 6569152 - 6569049
Alignment:
| Q |
405 |
tgggttcgtcaacaagcaataaagaccgaatttacgttaat-ataaagagttctcatcatcgtcatgaaagaaggtcgccaatgttagtgttggattgtg |
503 |
Q |
| |
|
||||||| | |||||| || |||| ||||||||| ||||| ||| ||| || |||||| || ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6569152 |
tgggttccttaacaagaaacaaaggtcgaatttaccttaattatagagaaatcccatcatggtggtgaaagaaggtcgccaatgttagtgttgggttgtg |
6569053 |
T |
|
| Q |
504 |
aaag |
507 |
Q |
| |
|
|||| |
|
|
| T |
6569052 |
aaag |
6569049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 98 - 242
Target Start/End: Complemental strand, 43350600 - 43350456
Alignment:
| Q |
98 |
atgttttgttatttatttatagttatggttgaacattcagttcgtagttatgttgagtcaaaataaaatattgttgagtcttccgataaattcaaaccat |
197 |
Q |
| |
|
|||||||||| | |||| ||| ||||||| ||| || ||||| || || |||||||||||||| ||||||||||||||||| | |||| ||| ||| |
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|
| T |
43350600 |
atgttttgttgtgtattaataattatggtcgaaaatacagttgataattttgttgagtcaaaatcaaatattgttgagtctttcttcgaattgaaatcat |
43350501 |
T |
|
| Q |
198 |
ttattgttgaaacttccctcgaattgaaactaaaaattgtcgaag |
242 |
Q |
| |
|
||||||||||| ||||| |||||||||||| ||| ||||| |||| |
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|
| T |
43350500 |
ttattgttgaagcttccgtcgaattgaaaccaaatattgttgaag |
43350456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 199
Target Start/End: Original strand, 28969810 - 28969861
Alignment:
| Q |
148 |
tgttgagtcaaaataaaatattgttgagtcttccgataaattcaaaccattt |
199 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||||| ||||| |
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|
| T |
28969810 |
tgttgagtcaaaatcaaatattgttgagtcttccatcaaattcaaagcattt |
28969861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 208
Target Start/End: Original strand, 39485091 - 39485193
Alignment:
| Q |
106 |
ttatttatttatagttatggttgaacattcagttcgtagttatgttgagtcaaaataaaatattgttgagtcttccgataaattcaaaccatttattgtt |
205 |
Q |
| |
|
|||||||||||| |||||| |||||||| || || || ||| |||||||||| |||||||||||||||||| || ||||||||| || ||||||| |
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|
| T |
39485091 |
ttatttatttattgttatgtttgaacatctgattgataattttgtcgagtcaaaatcaaatattgttgagtcttctaatgaattcaaacaatctattgtt |
39485190 |
T |
|
| Q |
206 |
gaa |
208 |
Q |
| |
|
||| |
|
|
| T |
39485191 |
gaa |
39485193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 706 - 819
Target Start/End: Original strand, 31785063 - 31785177
Alignment:
| Q |
706 |
agacaaggagattgttgctcacctcacagggaatatggtggaatctaagaacatcctgatgattttgaaagataaaagaaaagacattttaacaaatat- |
804 |
Q |
| |
|
||||||| |||||||| || || | ||| | | ||||||||| ||||||| ||||| |||| |||||||| |||||||||| ||| ||| |||||||| |
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|
| T |
31785063 |
agacaagaagattgttactaacgtgacaagaattatggtggagcctaagaatatccttatgaatttgaaagctaaaagaaaatacaatttgacaaatata |
31785162 |
T |
|
| Q |
805 |
aaagcaagtttacaa |
819 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
31785163 |
aaagcaagtgtacaa |
31785177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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