View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19997_low_10 (Length: 305)
Name: NF19997_low_10
Description: NF19997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19997_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 20 - 288
Target Start/End: Original strand, 34995694 - 34995959
Alignment:
| Q |
20 |
ttcttaatggagtgcacaatcattcaaatgataaagttagaaggtcaccttcttgctgtagattagccggaaaagacaaggagattgttgctcacctcac |
119 |
Q |
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| T |
34995694 |
ttcttaatggagtgcacaatcattcaatggataaagttagaaggtcaccttcttgctgtagattagccagaaaaaacaaggagattgttgctcacctcac |
34995793 |
T |
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| Q |
120 |
agggaatatggtggaatctaagaacatcctgatgattttgaaagataaaagaaaagacattttaacaaatataaagcaagtttacaattgataagtaaag |
219 |
Q |
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| T |
34995794 |
agggaatatggtggaatctaagaacatcctgatgattttgaaagataaaagaaaagacattttaacaaatataaagcaagtttacaattgataagtaaag |
34995893 |
T |
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| Q |
220 |
agataaaaatacgtaaataatagcttgagtttgattatttgtgtcttctatgtaaaagatgagtatttg |
288 |
Q |
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| T |
34995894 |
agataaaaatacgta---aatagcttgagtttgattatttgtgtcttctatgtaaaagatgagtatttg |
34995959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 93 - 206
Target Start/End: Original strand, 31785063 - 31785177
Alignment:
| Q |
93 |
agacaaggagattgttgctcacctcacagggaatatggtggaatctaagaacatcctgatgattttgaaagataaaagaaaagacattttaacaaatat- |
191 |
Q |
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| T |
31785063 |
agacaagaagattgttactaacgtgacaagaattatggtggagcctaagaatatccttatgaatttgaaagctaaaagaaaatacaatttgacaaatata |
31785162 |
T |
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| Q |
192 |
aaagcaagtttacaa |
206 |
Q |
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| T |
31785163 |
aaagcaagtgtacaa |
31785177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 200
Target Start/End: Complemental strand, 20521483 - 20521411
Alignment:
| Q |
128 |
tggtggaatctaagaacatcctgatgattttgaaagataaaagaaaagacattttaacaaatataaagcaagt |
200 |
Q |
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||||| || ||||||| || || |||| |||||| |||||||||||||| ||||||||||||||| ||||| |
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| T |
20521483 |
tggtgcaacctaagaatattctaatgaatttgaagagtaaaagaaaagacaatttaacaaatataaaacaagt |
20521411 |
T |
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