View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19997_low_12 (Length: 243)
Name: NF19997_low_12
Description: NF19997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19997_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 34665292 - 34665086
Alignment:
| Q |
19 |
caaagggaaaacaaagaaagagtgagaaagcaaagtgtgttcattgttgctatcacaaattttggtacgactttctttgttacaatacaacctttttata |
118 |
Q |
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| T |
34665292 |
caaagggaaaacaaagaaagagtgagaaagcaaagtgtgttcattgttgctatcacaaattttgatacgactttctttgttacaatacaacctttttata |
34665193 |
T |
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| Q |
119 |
gacttgtgactatgagaatgtagatagactcttacataagaataaagcctcaaaatttgtgattattcattcatcattcataaaggataaaaagaaaacg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34665192 |
gacttgtgactatgagaatgtagatagactcttacataagaatagagcctcaaaatttgtgattattcattcatcattcataaaggataaaaagaaaacg |
34665093 |
T |
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| Q |
219 |
gtaaaac |
225 |
Q |
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||||||| |
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| T |
34665092 |
gtaaaac |
34665086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 34645598 - 34645415
Alignment:
| Q |
19 |
caaagggaaaacaaagaaagagtgagaaagcaaagtgtgttcattgttgctatcacaaattttggtacgactttctttgttacaatacaacctttttata |
118 |
Q |
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||||||||||||||||||||||| |||||| | ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
34645598 |
caaagggaaaacaaagaaagagttagaaaggatagtgtgttcattgttgccatcacaaatttcggtacgactttctttgttacaatacaacctttttata |
34645499 |
T |
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| Q |
119 |
gactt---gtgactatgagaatgtagatagactcttacataagaataaagcctcaaaatttgtgattattcattcatcattcat |
199 |
Q |
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| T |
34645498 |
gactttaattgactatgagaatgtagatagactcttacataagaataaagcctcaaaatttgtgatcattcattcatcattcat |
34645415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 142 - 226
Target Start/End: Complemental strand, 45644696 - 45644612
Alignment:
| Q |
142 |
atagactcttacataagaataaagcctcaaaatttgtgattattcattcatcattcataaaggataaaaagaaaacggtaaaact |
226 |
Q |
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|||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
45644696 |
atagactcttacataagaatgtggcctgaaaatttgtgattattcattcatcattcataatggataaaaagaaaatggtaaaact |
45644612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 45644823 - 45644769
Alignment:
| Q |
19 |
caaagggaaaacaaagaaagagtgagaaagcaaagtgtgttcattgttgctatca |
73 |
Q |
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||||||||||| |||||||| | ||||| |||||||||||||||||||||||| |
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| T |
45644823 |
caaagggaaaagaaagaaaggattagaaatgaaagtgtgttcattgttgctatca |
45644769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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