View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19997_low_13 (Length: 237)
Name: NF19997_low_13
Description: NF19997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19997_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 6462811 - 6462590
Alignment:
| Q |
1 |
tttcattgtcccgatctatgtcttgagggttactcttttcttccatgacttctaattcggatttcttagcttcaacaatttctctctcttctttacattc |
100 |
Q |
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| T |
6462811 |
tttcattgtcccgatctatgttttgagggatactctcttcttccatgacttctaattcggatttcttagcttcaataatttctctctcttctttacattc |
6462712 |
T |
|
| Q |
101 |
atagtttccttaacctaagtttcttctcacaatttatcatcctcaaacccattatcgcatttcttattttcttccgttttattcacaaaataatatttct |
200 |
Q |
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| T |
6462711 |
atagtttccttaacctaagtttcttctcacaatttatcatcctcaaacccattatcgcatttcttattttcttccgttttattcacaaaataatatttct |
6462612 |
T |
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| Q |
201 |
tatcatcttctggttctttcct |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
6462611 |
tatcatcttctggttctttcct |
6462590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 42252402 - 42252346
Alignment:
| Q |
19 |
tgtcttgagggttactcttttcttccatgacttctaattcggatttcttagcttcaa |
75 |
Q |
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| T |
42252402 |
tgtcttcagggataatctcttcttccatgacttctaattcgggtttcttagcttcaa |
42252346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 96
Target Start/End: Complemental strand, 41847959 - 41847894
Alignment:
| Q |
31 |
tactcttttcttccatgacttctaattcggatttcttagcttcaacaatttctctctcttctttac |
96 |
Q |
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| T |
41847959 |
tactctcttcatccatggcatctaattcaggcttcttagcttcaacgctttctctctcttctttac |
41847894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 191
Target Start/End: Complemental strand, 42252292 - 42252239
Alignment:
| Q |
138 |
catcctcaaacccattatcgcatttcttattttcttccgttttattcacaaaat |
191 |
Q |
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||||||||||||||| ||| ||||||||||||||| |||| ||||||||||| |
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| T |
42252292 |
catcctcaaacccatgatcatttttcttattttcttctgtttcattcacaaaat |
42252239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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