View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19997_low_14 (Length: 231)
Name: NF19997_low_14
Description: NF19997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19997_low_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 34899532 - 34899761
Alignment:
| Q |
1 |
agaagtgtctgctaagacttacaaataattagttggtagctgaatgcagaaaattgaatatcgaaaatgtgtctctaaaaatgttcttagttattaggag |
100 |
Q |
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| T |
34899532 |
agaagtgtctgctaagacttacaaataattagttggtagctgaatgcagaaaattgaatatcgaaaatgtgtctctaaaaatgttcttagttattaggag |
34899631 |
T |
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| Q |
101 |
aacctcaattagtgggtcagttgacatgttccacttggtttttatgcgtaacgtaccacacaagcatatgcaaatgttataataagataggcaagagata |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34899632 |
aacctcaactagtgggtcagttgacatgttccacttggtttttatgcgtaa-gtaccacacaagcatatgcaaatgttataataagataggcaagagata |
34899730 |
T |
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| Q |
201 |
ccaaattatcatattgtcagtgatatcatct |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
34899731 |
ccaaattatcatattgtcagtgatatcatct |
34899761 |
T |
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