View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19997_low_2 (Length: 565)
Name: NF19997_low_2
Description: NF19997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19997_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 489; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 19 - 553
Target Start/End: Complemental strand, 36284251 - 36283718
Alignment:
| Q |
19 |
ggttctgcccatttaatttcattatcgcataggtcatcaacctgtcaaaagagatcacaaaacatctata-ttgtcttgagaaaaagaaagtaaattaaa |
117 |
Q |
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| T |
36284251 |
ggttctgcccatttaatttcattatcgcataggtcatcaacctgtcaaaagagatcacaaaacatctataattgtcatgagaaaaagaaagtaaattaaa |
36284152 |
T |
|
| Q |
118 |
aaagttaaccgataattaaccaaatctcaagagtaaaccaaccttaataatctcaagaacatcaagattggggcatttttctagtaacagtttaactaga |
217 |
Q |
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| T |
36284151 |
aaagttaaccgataattaaccaaatctcaagagtaaaccaaccttaataatctcaagaacatcaagattggggcatttttctagtaacagtttaactaga |
36284052 |
T |
|
| Q |
218 |
aaatgtgagttaaaggtttttaaatataattgtagataacccaaattgttaaatgttggaaattctagacaagcataagtaagcacctgcaacatggata |
317 |
Q |
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| T |
36284051 |
aaatgtgagttaaaggtttttaaatataattgtagataacccaaattgttaaatgttggaaattctagacaagcataagtaagcacctgcaacatggata |
36283952 |
T |
|
| Q |
318 |
aaaataacaaaagagttatgaaaaataacacacaatattcctatattaaaaatatcggtaaatagggcttttacctctgtggaatccatatctaagcaaa |
417 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36283951 |
aaaataacaaaagagttatgaaaaataagacaca--attcctatattaaaaatatcggtaaatagggctcttacctctgtggaatccatatctaagcaaa |
36283854 |
T |
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| Q |
418 |
gaaacctggttttatgaatgccattgaagagatttgatatattttgttttacttctttattttcatgatcaaaatagataccaatacgcgcttctttcaa |
517 |
Q |
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| T |
36283853 |
gaaacctggttttatgaatgccattgaggagatttgatatattttgttttacttctttattttcatgatcaaaatagataccaatacgtgcttctttcaa |
36283754 |
T |
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| Q |
518 |
tttgttcaaattctcaaccgcataactactcgcctt |
553 |
Q |
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| T |
36283753 |
tttgttcaaattctcaacctcataattactcgcctt |
36283718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 27 - 369
Target Start/End: Complemental strand, 34555107 - 34554768
Alignment:
| Q |
27 |
ccatttaatttcattatcgcataggtcatcaacctgtcaaaagagatcacaaaacatctata-ttgtcttgagaaaaagaaagtaaattaaaaaagttaa |
125 |
Q |
| |
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||||| |||||||||||| ||||| ||||||||||||||| ||| |||||| ||| ||||| |||| | | ||| |||||||| ||||| | || |
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| T |
34555107 |
ccattcaatttcattatcacatagttcatcaacctgtcaagtgaggtcacaacacaactataattgtatccaatgaaacaaagtaaaaataaaaattcaa |
34555008 |
T |
|
| Q |
126 |
ccgataattaaccaaatctcaagagtaaaccaaccttaataatctcaagaacatcaagattggggcatttttctagtaacagtttaactagaaaatgtga |
225 |
Q |
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| T |
34555007 |
gaaataattagctaaatctcaagagttaactaaccttgataatctctagaaattctagattggggcatttttctagcaacaactcaactagaaaatatga |
34554908 |
T |
|
| Q |
226 |
gttaaaggtttttaaatataattgtagataacccaaattgttaaatgttggaaattctagacaagcataagtaagcacctgcaacatggataaaaataac |
325 |
Q |
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| || | ||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34554907 |
atcaaggatttttaaatataattgtagatgacccaaatgatcaaatgttggaaattctagacaagcataagtaagcacctgcaa-gtggataaaaataac |
34554809 |
T |
|
| Q |
326 |
aaaagagttatgaaaaataacacacaatattcctatattaaaaa |
369 |
Q |
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||||| |||||| |||||||| ||| ||||||||| |||||| |
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| T |
34554808 |
-aaagaattatgagaaataacataca--attcctatactaaaaa |
34554768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 389 - 541
Target Start/End: Complemental strand, 34554624 - 34554472
Alignment:
| Q |
389 |
tacctctgtggaatccatatctaagcaaagaaacctggttttatgaatgccattgaagagatttgatatattttgttttacttctttattttcatgatca |
488 |
Q |
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||||||||||| || || ||||||||||||||| ||||||||| ||| |||||||| | ||||| |||||||| |||||||| ||||||||||| |||| |
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| T |
34554624 |
tacctctgtggtatacaaatctaagcaaagaaatctggttttacgaaccccattgaaaatatttgctatattttcttttacttttttattttcataatca |
34554525 |
T |
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| Q |
489 |
aaatagataccaatacgcgcttctttcaatttgttcaaattctcaaccgcata |
541 |
Q |
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|||| |||||||||| | ||||||||||| |||| ||||||||||||| |||| |
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| T |
34554524 |
aaatggataccaatatgtgcttctttcaaattgtccaaattctcaaccacata |
34554472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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