View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19997_low_3 (Length: 530)
Name: NF19997_low_3
Description: NF19997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19997_low_3 |
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| [»] scaffold0011 (2 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 240781 - 240505
Alignment:
| Q |
1 |
tgttggatgatttatttcacatgggatagctgacttgtgagacactttaccaatatagaatacgacttgcactttgctcatattgcaatcttccgagtct |
100 |
Q |
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| T |
240781 |
tgttggatgatttatttcacatgggatagctgacttgtgagacactttaccaatatagaatacgacttgcactttgctcatattgcaatcttccgagtct |
240682 |
T |
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| Q |
101 |
cagttttggtaaaattttagcaccttagttaaatagagacataaaatagaacaatacagcaaattccatgtgtgaagccgataagagtgtaacacctaaa |
200 |
Q |
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| T |
240681 |
cagttttggtaaaattttagcaccttagttaaatagagacataaaatagaacaatacagcaaattccatgtgtgaagccgataagagtgtaacacctaaa |
240582 |
T |
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| Q |
201 |
tttgaaagcaaagtaaaatggatttaatttttatacaccggaaaaccgatatgacttgtgaaaccataaatgtgaaa |
277 |
Q |
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| T |
240581 |
tgtgaaagcaaagtaaaatggatttaatttttatacaccggaaaaccgatatgacttgtgaaaccataaatgtgaaa |
240505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 277 - 506
Target Start/End: Complemental strand, 240461 - 240235
Alignment:
| Q |
277 |
aatttgtatacaccgcactcaatgataccacttttttaggttaatttctaaaacatctctataactaattacttggcatgttttgattagatgcaatata |
376 |
Q |
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| T |
240461 |
aatttgtatacaccgcactcaatgataccacttttttgggttaatttctaaaatatctctataactaattacttggcatgttttgattagatgcaatata |
240362 |
T |
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| Q |
377 |
agcaagtaaaaatagtcacataaaatatgccacacacatacnnnnnnncacccatatcaagtcaaatacacaagcatcctctaatatccaaggaccgtcc |
476 |
Q |
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| T |
240361 |
agtaagt-aaaatagtcacat--aatatgccacacacatacaaaaaaacacccatatcaagtcaaatacacaagcatcctctaatatccaaggaccgtcc |
240265 |
T |
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| Q |
477 |
ttcttcatttgatgcaacatgattacatga |
506 |
Q |
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| T |
240264 |
ttctccatttgatgcaacatgattacatga |
240235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 296 - 334
Target Start/End: Original strand, 44599484 - 44599522
Alignment:
| Q |
296 |
caatgataccacttttttaggttaatttctaaaacatct |
334 |
Q |
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|||||||||||||| ||||||||||||||||||| |||| |
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| T |
44599484 |
caatgataccacttctttaggttaatttctaaaatatct |
44599522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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