View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19997_low_8 (Length: 343)
Name: NF19997_low_8
Description: NF19997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19997_low_8 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 6463158 - 6462813
Alignment:
| Q |
1 |
caaatgtgagtttcataattattacaacttataaaaagtatgacaagatcgtttcatatttttcacacacatatgtatccatatttaacaagaaaatcac |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
6463158 |
caaatgtgagtttcataattattacaccttataaaaagtatgacaagatcgtttcatatttttcaaacacatatgtatccatatttaacaagaaaatcac |
6463059 |
T |
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| Q |
101 |
aatcataggagatacgctcattaacnnnnnnntaattgtctcttttgcacatcgagtgagttattttccatggatcatcatttatttcaaataatttgaa |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6463058 |
aatcataggagatacgctcattaacaaaaaaataattgtctcttttgcacatcgagtgagttattttccatgtatcatcatttatttcaaataatttgaa |
6462959 |
T |
|
| Q |
201 |
atcattatactcaattcaacttgcatcttggacgcaccg---nnnnnnnnnnnnnnnnnnngaacaagttgtcttgtaccttatcttcatcgtttgactt |
297 |
Q |
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||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
6462958 |
atcattatactcaattcaacttgcaccttggacgcaccgtttttaactatttttttttgttgaacaagttgtcttgtaccttatcttcatcatttgactt |
6462859 |
T |
|
| Q |
298 |
atcattaaccttaacatgataatccgtcctctcttgatttttctcc |
343 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
6462858 |
atcattaaccttaacctgataatccgccctctcttgatttttctcc |
6462813 |
T |
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