View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19998_high_2 (Length: 494)
Name: NF19998_high_2
Description: NF19998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19998_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 13)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 4 - 308
Target Start/End: Complemental strand, 3196495 - 3196191
Alignment:
| Q |
4 |
tggacatcatcagattaaatagactaagttctgtatctatagatagagatgcattacttggtcttgaacactttcgatgtaacagcattcctgaattgaa |
103 |
Q |
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||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| || ||||||||||||||| |
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| T |
3196495 |
tggacctcaccagattaaatagactaagttctgtatctatagatagagatgctttacttggtcttgaacactttagatgtatcaacattcctgaattgaa |
3196396 |
T |
|
| Q |
104 |
ggtgttaccccaagaccttcaaaacttggaaaaccttcaattccttggatttactgatatgccagttgaattagtggatagcattgatcgagaaaaagac |
203 |
Q |
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||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||| |
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| T |
3196395 |
ggtgttaccccaagaacttcaaaacttgaaaaaccttcaattccttggatttgctgatatgccagttgaattagttgatagcattgatcgagagaaagac |
3196296 |
T |
|
| Q |
204 |
ggaagacgccattggattatcaatcatattccccgtgtactagtttgtcataatgtaggatcaagttttgatgaatatgtgtggcgccacattccaactc |
303 |
Q |
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||| | ||||||||||||||||||||||||||| ||||||| || || | || ||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
3196295 |
ggagcatgccattggattatcaatcatattccccttgtactaattcgtgagaaagtaggatcaagttttcatgaatatgagtggcgccacattccaactc |
3196196 |
T |
|
| Q |
304 |
aactc |
308 |
Q |
| |
|
||||| |
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|
| T |
3196195 |
aactc |
3196191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 15 - 267
Target Start/End: Original strand, 3215569 - 3215821
Alignment:
| Q |
15 |
agattaaatagactaagttctgtatctatagatagagatgcattacttggtcttgaacactttcgatgtaacagcattcctgaattgaaggtgttacccc |
114 |
Q |
| |
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||||||||||||||||||||| |||||||||| ||| || ||| ||| ||| |||||||| ||| || | || ||| |||||||||| ||||||| |
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| T |
3215569 |
agattaaatagactaagttctatatctatagacgaagaagctttagttgatctcgaacacttcagatttagaaacaaccctcaattgaaggttttacccc |
3215668 |
T |
|
| Q |
115 |
aagaccttcaaaacttggaaaaccttcaattccttggatttactgatatgccagttgaattagtggatagcattgatcgagaaaaagacggaagacgcca |
214 |
Q |
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| ||||| ||||||||| ||||||||||||||||||||||| |||| ||||| ||||||||||| ||||||||||||| ||| |||| |||| | ||| |
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| T |
3215669 |
atgacctccaaaacttgaaaaaccttcaattccttggatttgctgaaatgcctgttgaattagttgatagcattgatccagagaaaggtggaacatgccg |
3215768 |
T |
|
| Q |
215 |
ttggattatcaatcatattccccgtgtactagtttgtcataatgtaggatcaa |
267 |
Q |
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||||||||||||||||||||||| ||||| | || |||| ||||||||||||| |
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| T |
3215769 |
ttggattatcaatcatattccccttgtacaaattcgtcagaatgtaggatcaa |
3215821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 3202954 - 3203176
Alignment:
| Q |
15 |
agattaaatagactaagttctgtatctatagatagagatgcattacttggtcttgaacactttcgatgtaacagcattcctgaattgaaggtgttacccc |
114 |
Q |
| |
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||||||||||||||||||| |||||||||||| | |||||| ||| ||| |||||||||||| ||| ||||| || ||| ||||||||||||| ||| |
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| T |
3202954 |
agattaaatagactaagttttgtatctatagacaaagatgctttagttgatcttgaacacttcagatttaacaacaaccctcaattgaaggtgttgccca |
3203053 |
T |
|
| Q |
115 |
aagaccttcaaaacttggaaaaccttcaattccttggatttactgatatgccagttgaattagtggatagcattgatcgagaaaaagacggaagacgcca |
214 |
Q |
| |
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||||||| |||||| || |||||||||| |||||||||||| |||||||||||| | |||||| ||||||||| ||| ||| |||| ||| | |||| |
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| T |
3203054 |
aagacctccaaaacctgaaaaaccttcagttccttggatttgctgatatgccagctacattagttgatagcattaatccagagaaaggtggaccatgcca |
3203153 |
T |
|
| Q |
215 |
ttggattatcaatcatattcccc |
237 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
3203154 |
ttggattatcaatcatattcccc |
3203176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 3302061 - 3301833
Alignment:
| Q |
15 |
agattaaatagactaagttctgtatctatagatagagatgcattacttggtcttgaacactttcgatgtaacagcattcctgaattgaaggtgttacccc |
114 |
Q |
| |
|
||||||| || |||||||||| |||||||| | |||||| ||| || |||||||||||| ||| ||| | || |||| |||||||||| ||||| | |
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| T |
3302061 |
agattaagtaaactaagttctatatctatacacgaagatgctttagttaatcttgaacacttcagatttaaaaacaatcctcaattgaaggttttaccgc |
3301962 |
T |
|
| Q |
115 |
aagaccttcaaaacttggaaaaccttcaattccttggatttactgatatgccagttgaattagtggatagcattgatcgagaaaaagacggaagacgcca |
214 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||| || |||| ||| | ||| |
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|
| T |
3301961 |
aagacctccaaaacttgaaaaaccttcaattccttggatttgctgaaatgccagttgaattagttgatagcattgatcctgagaaaggtggagcgcacca |
3301862 |
T |
|
| Q |
215 |
ttggattatcaatcatattccccgtgtac |
243 |
Q |
| |
|
| ||||||||||||||||||||| ||||| |
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| T |
3301861 |
tcggattatcaatcatattccccttgtac |
3301833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 15 - 268
Target Start/End: Complemental strand, 3308746 - 3308493
Alignment:
| Q |
15 |
agattaaatagactaagttctgtatctatagatagagatgcattacttggtcttgaacactttcgatgtaacagcattcctgaattgaaggtgttacccc |
114 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||| ||| || |||||||||||| ||| ||| | || |||| | |||||||| |||| |
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|
| T |
3308746 |
agattaaatagactaagttctatatctatagacgaagatgctttagttaatcttgaacacttcagatttaaaaacaatcctcagttgaaggttgtaccag |
3308647 |
T |
|
| Q |
115 |
aagaccttcaaaacttggaaaaccttcaattccttggatttactgatatgccagttgaattagtggatagcattgatcgagaaaaagacggaagacgcca |
214 |
Q |
| |
|
||||||| ||||||||| ||||||||||||||||||||||| |||| |||||||||||| |||| ||||||||||||| || |||| ||| ||| |
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| T |
3308646 |
aagacctccaaaacttgaaaaaccttcaattccttggatttgctgaaatgccagttgaactagttgatagcattgatcctgagaaaggtggagtgtacca |
3308547 |
T |
|
| Q |
215 |
ttggattatcaatcatattccccgtgtactagtttgtcataatgtaggatcaag |
268 |
Q |
| |
|
| |||||||||||||||||||| ||||| | || |||| |||||||||||||| |
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| T |
3308546 |
tcagattatcaatcatattccccttgtacgaattcgtcagaatgtaggatcaag |
3308493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 99 - 245
Target Start/End: Complemental strand, 3355398 - 3355252
Alignment:
| Q |
99 |
ttgaaggtgttaccccaagaccttcaaaacttggaaaaccttcaattccttggatttactgatatgccagttgaattagtggatagcattgatcgagaaa |
198 |
Q |
| |
|
||||||||| | || |||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||| || || |||||||||| ||||| |
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|
| T |
3355398 |
ttgaaggtggttccacaagaccttcaacacttgaaaaaccttcaattccttggatttgctgatatgccacaggaattggttgaaagcattgatccagaaa |
3355299 |
T |
|
| Q |
199 |
aagacggaagacgccattggattatcaatcatattccccgtgtacta |
245 |
Q |
| |
|
|||| ||| | |||||||||||||||| |||||||||| ||||||| |
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|
| T |
3355298 |
aagatggacaatgccattggattatcaagcatattccccttgtacta |
3355252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 114 - 245
Target Start/End: Original strand, 3723582 - 3723713
Alignment:
| Q |
114 |
caagaccttcaaaacttggaaaaccttcaattccttggatttactgatatgccagttgaattagtggatagcattgatcgagaaaaagacggaagacgcc |
213 |
Q |
| |
|
|||||||| || ||||| ||||||||||||||||||||||| ||||||||||| |||| |||| || |||||||||| | |||||| |||| | ||| |
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| T |
3723582 |
caagacctcaaacacttgaaaaaccttcaattccttggatttgctgatatgccacatgaactagttgaaagcattgatcctgcaaaagatggaaaatgcc |
3723681 |
T |
|
| Q |
214 |
attggattatcaatcatattccccgtgtacta |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
3723682 |
attggattatcaatcatattccccgtgtacta |
3723713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 57 - 192
Target Start/End: Complemental strand, 3219545 - 3219410
Alignment:
| Q |
57 |
ttacttggtcttgaacactttcgatgtaacagcattcctgaattgaaggtgttaccccaagaccttcaaaacttggaaaaccttcaattccttggattta |
156 |
Q |
| |
|
|||||||||||||| || || ||| ||||| || |||| | ||||||||| | || ||||||||| || ||||||||||||||||||||||||||||| |
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|
| T |
3219545 |
ttacttggtcttgatcatttcagatttaacaacaatcctcagttgaaggtggttccacaagaccttaaacacttggaaaaccttcaattccttggatttg |
3219446 |
T |
|
| Q |
157 |
ctgatatgccagttgaattagtggatagcattgatc |
192 |
Q |
| |
|
||||||||||| |||||| || || |||||||||| |
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|
| T |
3219445 |
ctgatatgccacctgaattggttgaaagcattgatc |
3219410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 115 - 277
Target Start/End: Complemental strand, 3300253 - 3300090
Alignment:
| Q |
115 |
aagaccttcaaaacttggaaaaccttcaattccttggatttactgatatgccagttgaattagtggatagcattgatc-gagaaaaagacggaagacgcc |
213 |
Q |
| |
|
||||||| ||||||| | ||||||||||||||||||||||| |||| |||||||| |||||||| ||||| ||||||| || |||| ||||| | || |
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|
| T |
3300253 |
aagacctccaaaactcgaaaaaccttcaattccttggatttgctgaaatgccagtggaattagttgatagtattgatcactgagaaaggtggaaggcacc |
3300154 |
T |
|
| Q |
214 |
attggattatcaatcatattccccgtgtactagtttgtcataatgtaggatcaagttttgatga |
277 |
Q |
| |
|
| || ||||||||||||||||||| ||||| | || ||| |||||||||||||| ||| |||| |
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|
| T |
3300153 |
actgtattatcaatcatattccccttgtacaaattcatcagaatgtaggatcaagatttcatga |
3300090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 338 - 385
Target Start/End: Complemental strand, 3196183 - 3196136
Alignment:
| Q |
338 |
gaaatataaaggtactctttcctctaactatgttacgcttctcatgcg |
385 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| | |||||||||| |
|
|
| T |
3196183 |
gaaatataaaggtactctttcctctaacaatgttatggttctcatgcg |
3196136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 478
Target Start/End: Complemental strand, 3308357 - 3308314
Alignment:
| Q |
435 |
atttcgttcttcaatcttccctttacatgaacgtttgcatcttt |
478 |
Q |
| |
|
||||| ||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
3308357 |
atttcattcctcaatcttccctttacatgaatgtttgcatcttt |
3308314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 380
Target Start/End: Complemental strand, 3300051 - 3300009
Alignment:
| Q |
338 |
gaaatataaaggtactctttcctctaactatgttacgcttctc |
380 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||| ||||||| |
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|
| T |
3300051 |
gaaatatcaaggtactctttcctctaacaatgttatgcttctc |
3300009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 338 - 380
Target Start/End: Complemental strand, 3308466 - 3308424
Alignment:
| Q |
338 |
gaaatataaaggtactctttcctctaactatgttacgcttctc |
380 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||| ||||||| |
|
|
| T |
3308466 |
gaaatatcaaggtactctttcctctaacaatgttatgcttctc |
3308424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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