View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19998_high_3 (Length: 449)
Name: NF19998_high_3
Description: NF19998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19998_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 58 - 439
Target Start/End: Complemental strand, 23695050 - 23694669
Alignment:
| Q |
58 |
ttccacatagaagccacacttaggacatcttttccatctcttgttcttagcaagttccatggccattagatcttccctccctcgctcgccgactttcaag |
157 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
23695050 |
ttccacatagaagccacactttggacatcttttccatctcttgttcttagcaagttccatggccattagatcttccctccctcgctcaccatctttcaag |
23694951 |
T |
|
| Q |
158 |
ctttgaaactctttacaaccaacacctgtgtgccatgaaaccttacattgtgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattc |
257 |
Q |
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||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23694950 |
cttagaaactctttacaatcaacacctatgtgccatgaaaccttacattgtgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattc |
23694851 |
T |
|
| Q |
258 |
ccttttcatcattcaacaacatagctgaacaatcattaaaaggacaataaaatttctgtgaacctaacaccatattctcacaaagtgcattttcccatct |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23694850 |
ccttttcatcattcaacaacatagctgaacaatcattaaaaggacaataaaatttctgtgaacctaacaccatattctcacaaagtgcattttcccatct |
23694751 |
T |
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| Q |
358 |
atcaaacacatcctttgctaaaattgaactacaatcatgaggctccaaaatatcattgcattttggatcaggacattttacc |
439 |
Q |
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| T |
23694750 |
atcaaacacatcctttggtaaaattgaactacaatcatgaggctccaaaatatcattgcattttggatcaggacattttacc |
23694669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 58 - 439
Target Start/End: Original strand, 23700751 - 23701132
Alignment:
| Q |
58 |
ttccacatagaagccacacttaggacatcttttccatctcttgttcttagcaagttccatggccattagatcttccctccctcgctcgccgactttcaag |
157 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
23700751 |
ttccacatagaagccacactttggacatcttttccatctcttgttctttgcaagttccatggccattagatcttccatccctcgctcgccgtctttcaag |
23700850 |
T |
|
| Q |
158 |
ctttgaaactctttacaaccaacacctgtgtgccatgaaaccttacattgtgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattc |
257 |
Q |
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||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23700851 |
ctttgaaacactttacaatcaacacctgtgtgccatgaaaccttacattgtgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattc |
23700950 |
T |
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| Q |
258 |
ccttttcatcattcaacaacatagctgaacaatcattaaaaggacaataaaatttctgtgaacctaacaccatattctcacaaagtgcattttcccatct |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
23700951 |
ccttttcatcattcaacaacatagctgaacaatcattaaaaggacaataaaatttctgtgaacctaacaccatattctcacaaagtgaattttcccatct |
23701050 |
T |
|
| Q |
358 |
atcaaacacatcctttgctaaaattgaactacaatcatgaggctccaaaatatcattgcattttggatcaggacattttacc |
439 |
Q |
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| T |
23701051 |
atcaaacacatcctttggtaaaattgaacaacaatcatgaggctccaaaatatcattgcattttggatcaggacattttacc |
23701132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 59 - 446
Target Start/End: Complemental strand, 23697180 - 23696793
Alignment:
| Q |
59 |
tccacatagaagccacacttaggacatcttttccatctcttgttcttagcaagttccatggccattagatcttccctccctcgctcgccgactttcaagc |
158 |
Q |
| |
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||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| |
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| T |
23697180 |
tccacatagaagctgcactttggacatcttttccatctcttgttcttagcaagttccatggccattagatctttcctccctcgctcgccatcttccaagc |
23697081 |
T |
|
| Q |
159 |
tttgaaactctttacaaccaacacctgtgtgccatgaaaccttacattgtgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattcc |
258 |
Q |
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||||||||||| ||||| ||||||| | ||||||||||||||||||||||||||| || ||||||| |||||| ||||| || ||| | || |||| | | |
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| T |
23697080 |
tttgaaactctctacaatcaacaccagagtgccatgaaaccttacattgtgcacaaaataatctattacaatgaggacactcagaaacggttacaacttc |
23696981 |
T |
|
| Q |
259 |
cttttcatcattcaacaacatagctgaacaatcattaaaaggacaataaaatttctgtgaacctaacaccatattctcacaaagtgcattttcccatcta |
358 |
Q |
| |
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|| ||||||||||| |||||||||||||||||||||||||||||| || ||||| |||||| ||||||||||||||||||||||||| ||| ||||||| |
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| T |
23696980 |
ctcttcatcattcaccaacatagctgaacaatcattaaaaggacagtacaatttttgtgaatctaacaccatattctcacaaagtgcctttccccatctc |
23696881 |
T |
|
| Q |
359 |
tcaaacacatcctttgctaaaattgaactacaatcatgaggctccaaaatatcattgcattttggatcaggacattttacctttgcta |
446 |
Q |
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|||||||||||||||| || || | ||||||| |||||||||||| ||| ||||||| ||||||| ||||||||||||| |||||| |
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| T |
23696880 |
tcaaacacatcctttggtataagggtgctacaattatgaggctccaatataccattgcaatttggataaggacattttaccattgcta |
23696793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 80 - 437
Target Start/End: Original strand, 8148913 - 8149270
Alignment:
| Q |
80 |
ggacatcttttccatctcttgttcttagcaagttccatggccattagatct---tccctccctcgctcgccgactttcaagctttgaaactctttacaac |
176 |
Q |
| |
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||||| ||||||||| |||| |||||||||||||||| |||||||||||| ||| ||| | |||| |||||| ||||||||||| ||||| |
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| T |
8148913 |
ggacaccttttccatttctttttcttagcaagttccagagccattagatctaaatccttcctcggaccgccttttttcaaaatttgaaactctctacaat |
8149012 |
T |
|
| Q |
177 |
caacacctgtgtgccatgaaaccttacattgtgcacagaacaatctatgacaatgtggacattccgaagcagtcacaattcccttttcatcattcaacaa |
276 |
Q |
| |
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| || | |||||||||| ||| | ||||||||| ||||| | ||||||||||||||||||||||| | |||||| | | ||| ||||||||| ||| |
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| T |
8149013 |
cgacttccgtgtgccatggaacttgacattgtgcgcagaatagtctatgacaatgtggacattccgtaattctcacaacttcatttccatcattcaccaa |
8149112 |
T |
|
| Q |
277 |
catagctgaacaatcattaaaaggacaataaaatttctgtgaacctaacaccatattctcacaaagtgcattttcccatctatcaaacacatcctttgct |
376 |
Q |
| |
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||||||||||||||| |||||||||||||||| ||||| ||| || |||| | | ||| ||||||| | ||||||| || ||||||||||||| | |
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| T |
8149113 |
catagctgaacaatccttaaaaggacaataaattttctttgatccgaacatcgaa---tcaactagtgcatctccccatctttcgaacacatcctttggt |
8149209 |
T |
|
| Q |
377 |
aaaattgaactacaatcatgaggctccaaaatatcattgcattttggatcaggacatttta |
437 |
Q |
| |
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| ||||||| |||| | |||| || ||| || |||||| ||||||||||||||||||| |
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|
| T |
8149210 |
ataattgaaatacattgttgagtgtcaaaattactattgcaatttggatcaggacatttta |
8149270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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