View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19998_high_4 (Length: 448)
Name: NF19998_high_4
Description: NF19998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19998_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 5053546 - 5053106
Alignment:
| Q |
1 |
ctggtggtttgttgaatttcacaagttctgcttcatcgcgtaaaaatctatctagaagtagcaatccagagttggaagacaagagaggtgtgccatcagg |
100 |
Q |
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| T |
5053546 |
ctggtggtttgttgaatttcacaagttctgcttcatcgcgtaaaaatctatctagaagtagcaatccagagttggaagacaagagaggtgtgccatcagg |
5053447 |
T |
|
| Q |
101 |
agctaatcctctgcataatcggtagcaacctctgtagcacctacacttctgatcgaagatgagtctggtgtgcgacacatgtcagtgtccaacacaagag |
200 |
Q |
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| T |
5053446 |
agctaatcctctgcataatcggtagcaacctctgtagcacctacacttctgatcgaagatgagtctggtgtgcgacacatgtcagtgtccaacacaagag |
5053347 |
T |
|
| Q |
201 |
acatagacaaacacgtgtacgtggggaccacagagaaagagatgtgttctgagagtattagcttcaggacctctaaagggttaaaacgaatctgatattc |
300 |
Q |
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| T |
5053346 |
acatagacaaacacgtgtacgtggggaccacagagaaagagatgtgttctgagagtattagcttcaggacctctaaagggttaaaacgaatctgatattc |
5053247 |
T |
|
| Q |
301 |
cttttgttcttgtttggaatgttatgagaaagaagggaaaaaagtattgatcatatttaagaattgtctataatttggattcttttaagtgttgttatct |
400 |
Q |
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| T |
5053246 |
cttttgttcttgtttggaatgttatgagaaagaagggaaaaaagtattgatcatatttaagaattgtctataatttggattcttttgagtgttgttatct |
5053147 |
T |
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| Q |
401 |
gacatgtttgtgcatgagctgtctctttgtttgatgatgtc |
441 |
Q |
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| T |
5053146 |
gacatgtttgtgcatgagctgtctctttgtttgattatgtc |
5053106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 195
Target Start/End: Complemental strand, 38461883 - 38461823
Alignment:
| Q |
135 |
tagcacctacacttctgatcgaagatgagtctggtgtgcgacacatgtcagtgtccaacac |
195 |
Q |
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| T |
38461883 |
tagcaccgacacttatgatcgaagatgtgtctagtgttcaacacgtgtcggtgtccaacac |
38461823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 133 - 196
Target Start/End: Complemental strand, 7942377 - 7942313
Alignment:
| Q |
133 |
tgtagcacctacacttctgatcgaagatgagtc-tggtgtgcgacacatgtcagtgtccaacaca |
196 |
Q |
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| T |
7942377 |
tgtagcaccaacacttctgatctaaggtgtgtcgtggtgtccgacacgtgtcagtgtccgacaca |
7942313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 18263605 - 18263541
Alignment:
| Q |
128 |
acctctgtagcacctacacttctgatcgaagatgagtctggtgtgcgacacatgtcagtgtccaa |
192 |
Q |
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| T |
18263605 |
acctctgtagcaccgacacttctgatcgaagacgtgtcaggtgcttgacacatgttagtatccaa |
18263541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 164
Target Start/End: Original strand, 38873128 - 38873164
Alignment:
| Q |
128 |
acctctgtagcacctacacttctgatcgaagatgagt |
164 |
Q |
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| T |
38873128 |
acctctgtagcaccgacacttctgatcgaagacgagt |
38873164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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