View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19998_high_6 (Length: 258)

Name: NF19998_high_6
Description: NF19998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19998_high_6
NF19998_high_6
[»] chr1 (12 HSPs)
chr1 (36-140)||(30252485-30252589)
chr1 (141-235)||(38459410-38459504)
chr1 (141-235)||(38460652-38460746)
chr1 (141-233)||(26852439-26852532)
chr1 (141-209)||(26853092-26853161)
chr1 (141-196)||(39861060-39861115)
chr1 (83-140)||(32583718-32583775)
chr1 (83-140)||(32659276-32659333)
chr1 (156-206)||(32017590-32017640)
chr1 (83-140)||(32601388-32601445)
chr1 (141-177)||(38459902-38459938)
chr1 (141-177)||(38461073-38461109)
[»] chr3 (6 HSPs)
chr3 (141-235)||(30626472-30626566)
chr3 (141-219)||(36369863-36369941)
chr3 (141-199)||(37627725-37627783)
chr3 (141-199)||(37628429-37628488)
chr3 (139-228)||(45262790-45262880)
chr3 (142-188)||(43276381-43276428)
[»] chr5 (5 HSPs)
chr5 (156-227)||(12423261-12423332)
chr5 (141-209)||(43514470-43514539)
chr5 (144-209)||(43513821-43513887)
chr5 (141-192)||(4549253-4549304)
chr5 (141-190)||(12422520-12422570)
[»] chr2 (5 HSPs)
chr2 (141-218)||(45628519-45628596)
chr2 (141-218)||(44996367-44996444)
chr2 (141-197)||(45627810-45627867)
chr2 (164-217)||(16497685-16497740)
chr2 (141-219)||(44995644-44995723)
[»] chr7 (8 HSPs)
chr7 (141-221)||(2564738-2564818)
chr7 (141-218)||(47676787-47676864)
chr7 (141-199)||(22982783-22982841)
chr7 (150-209)||(47677478-47677538)
chr7 (145-208)||(11702266-11702329)
chr7 (150-219)||(34149491-34149561)
chr7 (150-219)||(34177563-34177633)
chr7 (156-207)||(44423509-44423561)
[»] chr4 (6 HSPs)
chr4 (177-235)||(8719668-8719726)
chr4 (141-209)||(44891723-44891792)
chr4 (144-209)||(44892375-44892441)
chr4 (141-233)||(11146292-11146385)
chr4 (175-209)||(51743920-51743954)
chr4 (141-188)||(7919453-7919501)
[»] chr8 (6 HSPs)
chr8 (156-209)||(3298134-3298187)
chr8 (141-192)||(3528786-3528837)
chr8 (145-221)||(3294797-3294873)
chr8 (156-221)||(31278938-31278999)
chr8 (145-202)||(3528017-3528075)
chr8 (141-209)||(37651670-37651738)
[»] chr6 (1 HSPs)
chr6 (141-203)||(13852966-13853029)


Alignment Details
Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 36 - 140
Target Start/End: Complemental strand, 30252589 - 30252485
Alignment:
Q  36 ttcttttcaatctcatttatatgggccaacatatcagcaagttgtaccattccaatttttgaaactcttttcttcggaagttttgctgagccaaccttcg 135  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30252589 ttcttttcaatctcatttatttgggccaacatatcagcaagttgtaccattccaatttttgaaactcttttcttcggaagttttgctgagccaaccttcg 30252490  T
Q  136 aaatc 140  Q
    |||||    
T  30252489 aaatc 30252485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 141 - 235
Target Start/End: Original strand, 38459410 - 38459504
Alignment:
Q  141 gagaaatgttagggccacactccctaacacactctttaacacactccaataaaaattagccacatcaccacttctttttatccatttagcctgcc 235  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  38459410 gagaaatgctagggacacactccctaacacactctttaacacactccaataaaaattagccacatcaccacttctttttatgcatttaacctgcc 38459504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 141 - 235
Target Start/End: Complemental strand, 38460746 - 38460652
Alignment:
Q  141 gagaaatgttagggccacactccctaacacactctttaacacactccaataaaaattagccacatcaccacttctttttatccatttagcctgcc 235  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  38460746 gagaaatgctagggacacactccctaacacactctttaacacactccaataaaaattagccacatcaccacttctttttatgcatttaacctgcc 38460652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 233
Target Start/End: Original strand, 26852439 - 26852532
Alignment:
Q  141 gagaaatgttagggccacactccctaacacactcttt-aacacactccaataaaaattagccacatcaccacttctttttatccatttagcctg 233  Q
    |||||||| |||||  ||||||||||||||||||||| ||||||||||||| |||||| |||||||||||  |||||| ||| |||||| ||||    
T  26852439 gagaaatgctagggatacactccctaacacactcttttaacacactccaattaaaatttgccacatcacccattctttgtattcatttaacctg 26852532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 26853161 - 26853092
Alignment:
Q  141 gagaaatgttagggccacactccctaacacactc-tttaacacactccaataaaaattagccacatcacc 209  Q
    |||||||| ||||| ||||||||||||||||||| |||||||||||||||| |||||| |||||||||||    
T  26853161 gagaaatgctagggacacactccctaacacactcttttaacacactccaattaaaatttgccacatcacc 26853092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 196
Target Start/End: Complemental strand, 39861115 - 39861060
Alignment:
Q  141 gagaaatgttagggccacactccctaacacactctttaacacactccaataaaaat 196  Q
    |||||||| ||||| |||||||||||| ||||||||||||||||| |||| |||||    
T  39861115 gagaaatgctagggtcacactccctaatacactctttaacacacttcaattaaaat 39861060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 32583718 - 32583775
Alignment:
Q  83 cattccaatttttgaaactcttttcttcggaagttttgctgagccaaccttcgaaatc 140  Q
    |||||| |||||| |||||||| |||||| ||| ||| ||||||||||||||||||||    
T  32583718 cattcccattttttaaactcttctcttcgaaagatttcctgagccaaccttcgaaatc 32583775  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 32659276 - 32659333
Alignment:
Q  83 cattccaatttttgaaactcttttcttcggaagttttgctgagccaaccttcgaaatc 140  Q
    |||||| |||||| |||||||| |||||| ||| ||| ||||||||||||||||||||    
T  32659276 cattcccattttttaaactcttctcttcgaaagatttcctgagccaaccttcgaaatc 32659333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 32017590 - 32017640
Alignment:
Q  156 cacactccctaacacactctttaacacactccaataaaaattagccacatc 206  Q
    ||||||| ||||||| |||||| |||||||||||||| |||| ||||||||    
T  32017590 cacactctctaacactctctttgacacactccaataagaatttgccacatc 32017640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 32601388 - 32601445
Alignment:
Q  83 cattccaatttttgaaactcttttcttcggaagttttgctgagccaaccttcgaaatc 140  Q
    |||||| ||||||  ||||||| |||||| ||| ||| ||||||||||||||||||||    
T  32601388 cattcccattttttgaactcttctcttcgtaagatttcctgagccaaccttcgaaatc 32601445  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 141 - 177
Target Start/End: Original strand, 38459902 - 38459938
Alignment:
Q  141 gagaaatgttagggccacactccctaacacactcttt 177  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  38459902 gagaaatgntagggacacactccctaacacactcttt 38459938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 177
Target Start/End: Complemental strand, 38461109 - 38461073
Alignment:
Q  141 gagaaatgttagggccacactccctaacacactcttt 177  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  38461109 gagaaatgctagggacacactccctaacacactcttt 38461073  T

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Target: chr3 (Bit Score: 79; Significance: 5e-37; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 141 - 235
Target Start/End: Original strand, 30626472 - 30626566
Alignment:
Q  141 gagaaatgttagggccacactccctaacacactctttaacacactccaataaaaattagccacatcaccacttctttttatccatttagcctgcc 235  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  30626472 gagaaatgctagggtcacactccctaacacactctttaacacactccaataaaaattagccacatcaccacttctttttatgcatttaacctgcc 30626566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 141 - 219
Target Start/End: Complemental strand, 36369941 - 36369863
Alignment:
Q  141 gagaaatgttagggccacactccctaacacactctttaacacactccaataaaaattagccacatcaccacttcttttt 219  Q
    |||||||||||||| |||||||||||||| |||||||||||||||||||||||||  |||||||||| |||||||||||    
T  36369941 gagaaatgttagggtcacactccctaacatactctttaacacactccaataaaaaccagccacatcatcacttcttttt 36369863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 37627725 - 37627783
Alignment:
Q  141 gagaaatgttagggccacactccctaacacactctttaacacactccaataaaaattag 199  Q
    |||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||    
T  37627725 gagaaatgctagggacacactccctaacacactctttaacacacaccaatcaaaattag 37627783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Complemental strand, 37628488 - 37628429
Alignment:
Q  141 gagaaatgttagggccacactccctaacacactc-tttaacacactccaataaaaattag 199  Q
    |||||||| ||||| ||||||||||||||||||| |||||||||| ||||| ||||||||    
T  37628488 gagaaatgctagggacacactccctaacacactcttttaacacacaccaatcaaaattag 37628429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 228
Target Start/End: Original strand, 45262790 - 45262880
Alignment:
Q  139 tcgagaaatgttagggccacactccctaacacact-ctttaacacactccaataaaaattagccacatca-ccacttctttttatccattta 228  Q
    |||||||||| ||||| ||||||||||||| |||| || ||||| |||||||| | |||||||||||||| |||| ||||||||| ||||||    
T  45262790 tcgagaaatgctagggacacactccctaactcactcctataacatactccaatgataattagccacatcatccac-tctttttattcattta 45262880  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 188
Target Start/End: Original strand, 43276381 - 43276428
Alignment:
Q  142 agaaatgttagggccacactccctaacacactc-tttaacacactcca 188  Q
    ||||||| ||||| ||||||||||||||||||| ||||||||||||||    
T  43276381 agaaatgctagggacacactccctaacacactcttttaacacactcca 43276428  T

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Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 156 - 227
Target Start/End: Complemental strand, 12423332 - 12423261
Alignment:
Q  156 cacactccctaacacactctttaacacactccaataaaaattagccacatcaccacttctttttatccattt 227  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  12423332 cacactccctaacacactctttaacacactccaataaaaattagccacatcaccacttctttttatgcattt 12423261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 43514539 - 43514470
Alignment:
Q  141 gagaaatgttagggccacactccctaacacactc-tttaacacactccaataaaaattagccacatcacc 209  Q
    |||||||| ||||| ||||||||||||||||||| |||||||||||||||| |||||| |||||||||||    
T  43514539 gagaaatgctagggacacactccctaacacactcttttaacacactccaattaaaatttgccacatcacc 43514470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 43513821 - 43513887
Alignment:
Q  144 aaatgttagggccacactccctaacacactcttt-aacacactccaataaaaattagccacatcacc 209  Q
    ||||| ||||| |||||||||||||||||||||| ||||||||||||| |||||| |||||||||||    
T  43513821 aaatgctagggacacactccctaacacactcttttaacacactccaattaaaatttgccacatcacc 43513887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 4549304 - 4549253
Alignment:
Q  141 gagaaatgttagggccacactccctaacacactctttaacacactccaataa 192  Q
    |||||||| ||||| |||||||||||||||||||||| ||||||||||||||    
T  4549304 gagaaatgctagggacacactccctaacacactctttgacacactccaataa 4549253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 12422520 - 12422570
Alignment:
Q  141 gagaaatgttagggccacactccctaacacactc-tttaacacactccaat 190  Q
    |||||||||||||| ||||||||||||||||||| ||| ||||||||||||    
T  12422520 gagaaatgttagggacacactccctaacacactcttttgacacactccaat 12422570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 45628596 - 45628519
Alignment:
Q  141 gagaaatgttagggccacactccctaacacactctttaacacactccaataaaaattagccacatcaccacttctttt 218  Q
    |||||||| ||||| |||||||||||||||||||| |||||||||||||||||| ||| |||||||||| ||||||||    
T  45628596 gagaaatgctagggacacactccctaacacactctctaacacactccaataaaatttaaccacatcaccccttctttt 45628519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 44996444 - 44996367
Alignment:
Q  141 gagaaatgttagggccacactccctaacacactctttaacacactccaataaaaattagccacatcaccacttctttt 218  Q
    |||||||| ||| | |||||||||||||||||||| |||||||||||||||||| ||| |||||||||| ||||||||    
T  44996444 gagaaatgctagagacacactccctaacacactctctaacacactccaataaaatttaaccacatcaccccttctttt 44996367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 45627810 - 45627867
Alignment:
Q  141 gagaaatgttagggccacactccctaacacactc-tttaacacactccaataaaaatt 197  Q
    |||||||| ||||| || |||||||||||||||| |||||||||||||||| ||||||    
T  45627810 gagaaatgctagggacaaactccctaacacactcttttaacacactccaattaaaatt 45627867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 217
Target Start/End: Complemental strand, 16497740 - 16497685
Alignment:
Q  164 ctaacacactcttt-aacacactccaataaaaattagccacatca-ccacttcttt 217  Q
    |||||||||||||| ||||||||||||| ||||||| |||||||| ||||||||||    
T  16497740 ctaacacactcttttaacacactccaatcaaaattacccacatcatccacttcttt 16497685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 44995644 - 44995723
Alignment:
Q  141 gagaaatgttagggccacactccctaacacactcttt-aacacactccaataaaaattagccacatcaccacttcttttt 219  Q
    ||||||||  |||| || |||| |||||| ||||||| ||||||||||||| |||||| ||||||||||| || ||||||    
T  44995644 gagaaatgccagggacaaactctctaacatactcttttaacacactccaattaaaatttgccacatcacctctccttttt 44995723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 2564738 - 2564818
Alignment:
Q  141 gagaaatgttagggccacactccctaacacactctttaacacactccaataaaaattagccacatcaccacttctttttat 221  Q
    |||||||| ||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||| |  ||||||||||    
T  2564738 gagaaatgctagggtcacactccctaacatactctttaacacactccaatagaaattagccacatcatccattctttttat 2564818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 47676787 - 47676864
Alignment:
Q  141 gagaaatgttagggccacactccctaacacactctttaacacactccaataaaaattagccacatcaccacttctttt 218  Q
    |||||||| ||||| |||||||||||||||||||| |||||||||||||||||| |||  ||||||||| ||||||||    
T  47676787 gagaaatgctagggacacactccctaacacactctctaacacactccaataaaatttaatcacatcaccccttctttt 47676864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 199
Target Start/End: Original strand, 22982783 - 22982841
Alignment:
Q  141 gagaaatgttagggccacactccctaacacactctttaacacactccaataaaaattag 199  Q
    ||||||||  |||| |||||||||||||||||||||||||||||||||||| |||||||    
T  22982783 gagaaatgccagggtcacactccctaacacactctttaacacactccaatagaaattag 22982841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 47677538 - 47677478
Alignment:
Q  150 tagggccacactccctaacacactcttt-aacacactccaataaaaattagccacatcacc 209  Q
    ||||| |||||||||||||||||||||| ||||||||||||| |||||| |||||||||||    
T  47677538 tagggacacactccctaacacactcttttaacacactccaattaaaatttgccacatcacc 47677478  T

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Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 208
Target Start/End: Original strand, 11702266 - 11702329
Alignment:
Q  145 aatgttagggccacactccctaacacactctttaacacactccaataaaaattagccacatcac 208  Q
    |||| ||||| ||||| | |||||||||||||| |||||||||||| |||||||||||||||||    
T  11702266 aatgctagggacacaccctctaacacactctttgacacactccaatgaaaattagccacatcac 11702329  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 34149491 - 34149561
Alignment:
Q  150 tagggccacactccctaacacactc-tttaacacactccaataaaaattagccacatcaccacttcttttt 219  Q
    ||||| ||||| | ||||||||||| ||||||||||||||||||||| | ||||||||||| |||||||||    
T  34149491 tagggacacaccctctaacacactcatttaacacactccaataaaaaattgccacatcaccccttcttttt 34149561  T

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Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 34177633 - 34177563
Alignment:
Q  150 tagggccacactccctaacacactc-tttaacacactccaataaaaattagccacatcaccacttcttttt 219  Q
    ||||| ||||| | ||||||||||| ||||||||||||||||||||| | ||||||||||| |||||||||    
T  34177633 tagggacacaccctctaacacactcatttaacacactccaataaaaaattgccacatcaccccttcttttt 34177563  T

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Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 207
Target Start/End: Complemental strand, 44423561 - 44423509
Alignment:
Q  156 cacactccctaacacactctt-taacacactccaataaaaattagccacatca 207  Q
    |||||||| |||||||||||| |||||||||||||||| || |||||||||||    
T  44423561 cacactccttaacacactcttataacacactccaataataactagccacatca 44423509  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 177 - 235
Target Start/End: Complemental strand, 8719726 - 8719668
Alignment:
Q  177 taacacactccaataaaaattagccacatcaccacttctttttatccatttagcctgcc 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  8719726 taacacactccaataaaaattagccacatcaccacttctttttatgcatttaacctgcc 8719668  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 44891723 - 44891792
Alignment:
Q  141 gagaaatgttagggccacactccctaacacactc-tttaacacactccaataaaaattagccacatcacc 209  Q
    |||||||| ||||| ||||||||||||||||||| |||||||||||||||| |||||| |||||||||||    
T  44891723 gagaaatgctagggacacactccctaacacactcttttaacacactccaattaaaatttgccacatcacc 44891792  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 144 - 209
Target Start/End: Complemental strand, 44892441 - 44892375
Alignment:
Q  144 aaatgttagggccacactccctaacacactcttt-aacacactccaataaaaattagccacatcacc 209  Q
    ||||| ||||| |||||||||||||||||||||| ||||||||||||| |||||| |||||||||||    
T  44892441 aaatgctagggacacactccctaacacactcttttaacacactccaattaaaatttgccacatcacc 44892375  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 141 - 233
Target Start/End: Original strand, 11146292 - 11146385
Alignment:
Q  141 gagaaatgttagggccacactccctaacacactcttt-aacacactccaataaaaattagccacatcaccacttctttttatccatttagcctg 233  Q
    |||||||| ||||  |||||||||||||||||||||| |||||||| |||| |||||| |||||||||||  |||||| ||| |||||| ||||    
T  11146292 gagaaatgctaggaacacactccctaacacactcttttaacacacttcaattaaaatttgccacatcacccattctttgtattcatttaacctg 11146385  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 209
Target Start/End: Original strand, 51743920 - 51743954
Alignment:
Q  175 tttaacacactccaataaaaattagccacatcacc 209  Q
    |||||||||||||||| ||||||||||||||||||    
T  51743920 tttaacacactccaattaaaattagccacatcacc 51743954  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 188
Target Start/End: Original strand, 7919453 - 7919501
Alignment:
Q  141 gagaaatgttagggccacactccctaacacactc-tttaacacactcca 188  Q
    |||||||||||||| || ||||||||||||| || ||||||||||||||    
T  7919453 gagaaatgttagggacagactccctaacacattcttttaacacactcca 7919501  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 209
Target Start/End: Complemental strand, 3298187 - 3298134
Alignment:
Q  156 cacactccctaacacactctttaacacactccaataaaaattagccacatcacc 209  Q
    ||||||||||||||||||||||||||||||||||| |||| ||| |||||||||    
T  3298187 cacactccctaacacactctttaacacactccaatcaaaaatagacacatcacc 3298134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 3528837 - 3528786
Alignment:
Q  141 gagaaatgttagggccacactccctaacacactctttaacacactccaataa 192  Q
    |||||||| ||||| |||||||||||||||||||||| ||||||||||||||    
T  3528837 gagaaatgctagggacacactccctaacacactctttgacacactccaataa 3528786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 3294797 - 3294873
Alignment:
Q  145 aatgttagggccacactccctaacacactctttaacacactccaataaaaattagccacatcaccacttctttttat 221  Q
    |||||||||| ||||||| ||||||||| |||| |||||||||||| ||||  |||||  |||||  ||||||||||    
T  3294797 aatgttagggacacactctctaacacaccctttgacacactccaattaaaaccagccatgtcacctgttctttttat 3294873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 31278938 - 31278999
Alignment:
Q  156 cacactccctaacacactctttaacacactccaataaaaattagccacatcaccacttctttttat 221  Q
    ||||||||||||||||||    |||| ||||||||| ||||||||||||||||| || ||||||||    
T  31278938 cacactccctaacacact----aacatactccaatagaaattagccacatcacccctcctttttat 31278999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 202
Target Start/End: Original strand, 3528017 - 3528075
Alignment:
Q  145 aatgttagggccacactccctaacacactc-tttaacacactccaataaaaattagcca 202  Q
    |||| ||||| ||||||||||||||||||| ||| |||||||||||||| ||| |||||    
T  3528017 aatgctagggacacactccctaacacactcttttgacacactccaataataataagcca 3528075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 37651670 - 37651738
Alignment:
Q  141 gagaaatgttagggccacactccctaacacactctttaacacactccaataaaaattagccacatcacc 209  Q
    |||||||| || || |||||||  |||||| |  |||||||||||||||| |||||||| |||||||||    
T  37651670 gagaaatgctaaggtcacactctttaacacgccttttaacacactccaattaaaattagacacatcacc 37651738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 13853029 - 13852966
Alignment:
Q  141 gagaaatgttagggccacactccctaacacactc-tttaacacactccaataaaaattagccac 203  Q
    |||||||| ||||| ||||||||||||||||||| |||||||||| ||||| |||| |||||||    
T  13853029 gagaaatgctagggtcacactccctaacacactcttttaacacacaccaatcaaaactagccac 13852966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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