View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19998_high_9 (Length: 238)
Name: NF19998_high_9
Description: NF19998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19998_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 2551660 - 2551440
Alignment:
| Q |
1 |
gaaacacaaaattcaagcatttt---ttgtctttcttttctttatactcttgaaaaatattctannnnnnnnnnnnnnnnnntagaatatttttcaatgt |
97 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
2551660 |
gaaacacaaaattcaagcattttaatttgtctttcttttctttatactcttgaaaaatattctaatatatata----------agaatatttttcaatgt |
2551571 |
T |
|
| Q |
98 |
attccaaatgcaaaggcaaggtaacaaataaggaatctatttttattttcatttacacggttacttcatatgcaagttttttgcaaataaattccatgtg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2551570 |
attccaaatgcaaaggcaaggtaacaaataaggaatctatttttattttcatttacacggttacttcatatgcaagttttttgcaaataaattccatgtg |
2551471 |
T |
|
| Q |
198 |
taacatgatatacattattcattgatttcat |
228 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
2551470 |
taacatgatatacattattcattgatttcat |
2551440 |
T |
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