View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19998_low_1 (Length: 722)
Name: NF19998_low_1
Description: NF19998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19998_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 226 - 714
Target Start/End: Complemental strand, 29727513 - 29727023
Alignment:
| Q |
226 |
gcaaagttaattaagggaattatgctgtgggtctgcttgcacatgcccacagccagccgtgttgaaccacaagtcttctaattttctggcatctataggt |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29727513 |
gcaaagttaattaagggaattatgctgtgggtctgcttgcacatgcccacagccagccgtgttgaaccacaagtcttctaattttctggcatctataggt |
29727414 |
T |
|
| Q |
326 |
tgcatagtacttcaacatgctacaaggcaaagaacaaaagatttttgatgtgatggtttgcaaggagaaagacaaaatatgtatctatcacctaattaga |
425 |
Q |
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|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
29727413 |
tgcatattacttcaacatgctacaaggcaaagaacgaaagatttttgatgtgatggtttgcaaggagaaagacaaaatatgcatccatcacctaattaga |
29727314 |
T |
|
| Q |
426 |
gccattcattcccttttgtaatttctacggtacagcacaaccaatcaagtttcaacaacacattttttaattataaataagacatcctactaaactacat |
525 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29727313 |
gccattcattcccttttgtaatttctacggtacagcacaaccaatcaagtttcaacaacacattttttaattataaataagacatcctactaaactacat |
29727214 |
T |
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| Q |
526 |
--tactacgtaataacaataaccaccttccatttcccacattagccaaatcgttatcactaaccatattcacattatcactaacatgttttccttaacac |
623 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29727213 |
tatactacgtaaaaacaataaccaccttccatttcccacattagccaaatcgttatccctaaccatattcacattattactaacatgttttccttaacac |
29727114 |
T |
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| Q |
624 |
ttcccatgccactactactaaagacagctactactactaaccatgttcatcgggggatcactcagatacaaactcattctcgatattcttc |
714 |
Q |
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| T |
29727113 |
ttcccatgccactactactaaagacagctattactactaaccatgttcatcgggggatcactcagatacaaactcattctcgatattcttc |
29727023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 224
Target Start/End: Original strand, 24683223 - 24683428
Alignment:
| Q |
19 |
ttgtctacgaggggctagacgaagtattgcgtatagaaagcaggaagggctttgtgaggcagcaatgcgagatcgccctcagatctttctcgtagcctct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24683223 |
ttgtctacgaggggctagacgaagtattgcgtatagaaagcaggaagggctttgtgaggcagcaatgcgagatcgccctcagatctttctcgtagcctct |
24683322 |
T |
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| Q |
119 |
ggggtacttatttatgcttaactcaaggagtttcgactatacgcttcgggtcttaccttatttcatgctgatcgaagcgctatcccttcttatcccctct |
218 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24683323 |
ggggtacttatttatgcttaactcaaggagtttctactatacgcttcgggtcttaccttatttcatgctgatcgaagcgctatcccttcttatcccctct |
24683422 |
T |
|
| Q |
219 |
ttgtat |
224 |
Q |
| |
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|||||| |
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| T |
24683423 |
ttgtat |
24683428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 104
Target Start/End: Original strand, 9926183 - 9926224
Alignment:
| Q |
63 |
aagggctttgtgaggcagcaatgcgagatcgccctcagatct |
104 |
Q |
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| T |
9926183 |
aagggctttgtgaggcagcaatgcgagatcgccctcagatct |
9926224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 156; Significance: 2e-82; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 50 - 224
Target Start/End: Complemental strand, 16060640 - 16060468
Alignment:
| Q |
50 |
tatagaaagcaggaagggctttgtgaggcagcaatgcgagatcgccctcagatctttctcgtagcctctggggtacttatttatgcttaactcaaggagt |
149 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
16060640 |
tatagaaagcagg--gggctttgtgaggcagcaatgcgagatcgccctcagatctttcttgtagcctctggggtacttatttatgcttaactcaaggagt |
16060543 |
T |
|
| Q |
150 |
ttcgactatacgcttcgggtcttaccttatttcatgctgatcgaagcgctatcccttcttatcccctctttgtat |
224 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16060542 |
ttctactatacgcttcgggtcttaccttatttcatgctgatcgaagcgctatcccttcttatcccctctttgtat |
16060468 |
T |
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