View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19998_low_5 (Length: 384)
Name: NF19998_low_5
Description: NF19998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19998_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 16 - 374
Target Start/End: Original strand, 49519997 - 49520357
Alignment:
| Q |
16 |
aaacacaaataacaaaaatcaaattacccaaactataaaacaataactaacccatccaataccccaacatgctagttggcaagctggttaatgctgaaaa |
115 |
Q |
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| T |
49519997 |
aaacacaaataacaaaaatcaaattacccaaactataaaacaataactaacccatccaataccccaacatgctagttggcaagctggttaatgctgaaaa |
49520096 |
T |
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| Q |
116 |
ttggaattcggcaaacaagttgagcatgtaatttctcaacttgttatcacagtagaggagagcagaatatatgaaaggtaatctactgtctaaaaacgag |
215 |
Q |
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| T |
49520097 |
ttggcattcagcaaacaagttgagcatgtaatttctcaacttgttatcacagtagaggagagcagaatatatgaaaggtaatctactgtctaaaaacgag |
49520196 |
T |
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| Q |
216 |
taaaatatatctggtcacacaaagtagcaatcatgtgtatcctttcaatttctcacttagtatctagt---ataaaaggaaaaatagattagcaatcgtt |
312 |
Q |
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| T |
49520197 |
taaaatatatctggccacgcaaagtagcaatcatgtgtatcctttcaatttctcacttagtatctagtataataaaagggaaaatagattagcaatcg-t |
49520295 |
T |
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| Q |
313 |
tttactttcaattctaagatagtaaactttgctattcaatttgcagcctcgacatagaataa |
374 |
Q |
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| T |
49520296 |
tttactttcaattctaagatagtaaactttgctattcaatttgcagcctcgacatagaataa |
49520357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 241 - 369
Target Start/End: Original strand, 49528798 - 49528929
Alignment:
| Q |
241 |
agcaatcatgtgtatcctttcaatttctcacttagtatctagtataaaaggaaaaatagattagcaatcgtttt--tactttcaattctaagatagtaaa |
338 |
Q |
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| T |
49528798 |
agcaatcatgtttatcctttcaattttccacttagtatcgactataaaagcgaaaataaagtagcaatcatttttatacttccaatttaaagatagtaaa |
49528897 |
T |
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| Q |
339 |
ctttgctattc-aatttgcagcctcgacatag |
369 |
Q |
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| T |
49528898 |
acttgctatccaaatttgtagcctcgacatag |
49528929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 33 - 151
Target Start/End: Original strand, 49530839 - 49530957
Alignment:
| Q |
33 |
atcaaattacccaaactataaaacaataactaacccatccaatacccc-aacatgctagttggcaagctggttaatgctgaaaattggaattcggcaaac |
131 |
Q |
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| T |
49530839 |
atcaaactaccccaactgtataacaataactaacccatacaatgcccctcacatgcttgttagcaagctggtaaat-cttaaaattggcatttggcgaac |
49530937 |
T |
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| Q |
132 |
aagttgagcatgtaatttct |
151 |
Q |
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|||| ||||||||||||||| |
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| T |
49530938 |
aagtagagcatgtaatttct |
49530957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 216
Target Start/End: Original strand, 49531046 - 49531097
Alignment:
| Q |
165 |
cagtagaggagagcagaatatatgaaaggtaatctactgtctaaaaacgagt |
216 |
Q |
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| T |
49531046 |
cagtagaggagagcagaacatatgaaaggtaatgtattgtctaaaaacgagt |
49531097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 145
Target Start/End: Original strand, 49525070 - 49525141
Alignment:
| Q |
72 |
caataccccaacatgctagttggcaagctggttaatgctgaaaattggaattcggcaaacaagttgagcatgta |
145 |
Q |
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| T |
49525070 |
caataccgcaacatgctagtcagcaagctggtcaatgctgaaaattggca--caacaaacaagttgagcatgta |
49525141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 253 - 369
Target Start/End: Original strand, 49531144 - 49531261
Alignment:
| Q |
253 |
tatcctttcaatttctcacttagtatctagtataaaaggaaaaatagattagcaatcgtttt--tactttcaattctaagatagtaaactttgctattca |
350 |
Q |
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| T |
49531144 |
tatcctttcaattttccacgtagaacctagtataaaagcaaaaataacgtagtaatcgtttttatactttcaatttatagatagtaaac-ctgctagcca |
49531242 |
T |
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| Q |
351 |
atttgcagcctcgacatag |
369 |
Q |
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||||| ||||||||||||| |
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| T |
49531243 |
atttgtagcctcgacatag |
49531261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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