View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19998_low_6 (Length: 270)
Name: NF19998_low_6
Description: NF19998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19998_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 43713981 - 43714230
Alignment:
| Q |
1 |
tcatcattgggcctgaatgacttttcctattggttgacgttgcaaaatgacaataagaatgtaagatt--------aaatgaaaacaaatattaaattac |
92 |
Q |
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| T |
43713981 |
tcatcattgggcctgaatgacttttcctattggttgacgttgcaaaatgacaataagaatgtaagattaaatgattaaatgaaaacaaatattaaattac |
43714080 |
T |
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| Q |
93 |
aaatgtaaactgtttcgatagaagtgcatgatttatatttgatcttccaagagaaaggaaaacaagaagtttcatccctaaaagatacaaatatgaacca |
192 |
Q |
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| T |
43714081 |
aaatgtaaactgtttcgatagaagtgcatgatttatatttgatcttccaagagaaaggaaaacaagaagtttcatccctaaaagatacaaatatgaacca |
43714180 |
T |
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| Q |
193 |
agccgagaatagttcatcaaaagtcagctggttcaactagcaaattgtgt |
242 |
Q |
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| T |
43714181 |
agccgagaatagttcatcaaaagtcagctggttcaaccagcaaattgtgt |
43714230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 52893742 - 52893511
Alignment:
| Q |
1 |
tcatcattgggcctgaatgacttttcctattggttgacgttgcaaaatgacaataagaatgtaag--attaaatgaaaacaaatattaaattacaaatgt |
98 |
Q |
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| T |
52893742 |
tcatcatcgggcctgaatgacttttcctattggatgacattgc-aaatgacaataagaatttaagatataaaatgaaaacaaatgttaaatcacaaatgt |
52893644 |
T |
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| Q |
99 |
aaactgtttcgatagaagtgcatgatttatatttgatcttccaagagaaaggaaaacaagaagtttcatccctaaaagatacaaatatgaaccaagccga |
198 |
Q |
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| T |
52893643 |
aaactgt--------aagtgcacgatttatattttatcttccaagagaaagaaaaac---aagtttcattcctaaaagatacaaatatgaatcaagaaga |
52893555 |
T |
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| Q |
199 |
gaatagttcatcaaaagtcagctggttcaactagcaaattgtgt |
242 |
Q |
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| T |
52893554 |
caatagttcaacacaaaccagctggttcaaccacaaaattgtgt |
52893511 |
T |
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