View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19998_low_9 (Length: 254)
Name: NF19998_low_9
Description: NF19998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19998_low_9 |
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| [»] scaffold0231 (1 HSPs) |
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Alignment Details
Target: scaffold0231 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: scaffold0231
Description:
Target: scaffold0231; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 10446 - 10221
Alignment:
| Q |
14 |
aaaataaacattttcagaacttaaacttcaaaggttgtaaatctttgcttaggcaatctcattagcatgaattacatcaagcacaagaagaaactgctaa |
113 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10446 |
aaaataaacattttaagaacttaaacttcaaaggttgtaaatctttgcttaggcaatctcattagcatgaatttcatcaagcacaagaagaaactgctaa |
10347 |
T |
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| Q |
114 |
ccagaaactacatcatcagtaaaagtcttgtgtatgaactatagctgataaccttttaaatctttaaattcaaaagaagagatgttaaaacgacataatt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10346 |
ccagaaactacatcatcagtaaaagtcttgtgtatgaactatagctgataaccttttaaatctttaaattcaaaagaagagatgttaaaacgacataatt |
10247 |
T |
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| Q |
214 |
aacagatgttaaacaccactgatatt |
239 |
Q |
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|| ||||||||||||||||||||||| |
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| T |
10246 |
aagagatgttaaacaccactgatatt |
10221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 139; Significance: 8e-73; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 14 - 174
Target Start/End: Complemental strand, 24237760 - 24237603
Alignment:
| Q |
14 |
aaaataaacattttcagaacttaaacttcaaaggttgtaaatctttgcttaggcaatctcattagcatgaattacatcaagcacaagaagaaactgctaa |
113 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24237760 |
aaaataaacatttttagaacttaaacttcaaaggttgtaaatctttgcttaggcaatctcattagcatgaattacatcaagcacaagaagaaactgctaa |
24237661 |
T |
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| Q |
114 |
ccagaaactacatcatcagtaaaagtcttgtgtatgaactatagctgataaccttttaaat |
174 |
Q |
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| T |
24237660 |
ccagaaactac---atcagtaaaagtcttgtgtatgaactataactgataaccttttaaat |
24237603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 24237571 - 24237499
Alignment:
| Q |
171 |
aaatctttaaattcaaaagaagagatgttaaaacgacataattaac----agatgttaaacaccactgatatt |
239 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24237571 |
aaatcttcaaattcaaaagaagagatgttaaaacgacataattaattaagagatgttaaacaccactgatatt |
24237499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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