View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19999_high_10 (Length: 307)
Name: NF19999_high_10
Description: NF19999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19999_high_10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 11 - 307
Target Start/End: Original strand, 20419123 - 20419419
Alignment:
| Q |
11 |
cacagagcctaataaattagatccggatgttgagtggaacactgtttctgtgccagggcctcggaaattacaagtgagaaggcatgttaagcatgaaggg |
110 |
Q |
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| T |
20419123 |
cacagagcctaataaattagattcggatgtcgagtggaacactgtttctgtgccagggcctcggaaattacaagtgagaaggcatgttaagcatgaaggg |
20419222 |
T |
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| Q |
111 |
gatgacgatggttctgttgcaggaattcctttacaagctgaatttccaacatacagtgaagcaagttatctttccaatccagcagattcaacattacctt |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
20419223 |
gatgacgatggttctgttgcaggaattcctttacaagctgaatttccaacatacagtgaagcaagttatctgtccaatccagcagattcaacattacctt |
20419322 |
T |
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| Q |
211 |
tagaatacgaccctgctgcttttgacagcaatctgatgattgattttgaagacaataacaataccatcttcgatacaaatgaacttctgcgctcaga |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20419323 |
tagaatacgaccctgctgcttttgacagcaatctgatgattgattttgaagacaataacaataccatcttcgatacaaatgaacttctgcgctcaga |
20419419 |
T |
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