View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19999_low_1 (Length: 371)
Name: NF19999_low_1
Description: NF19999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19999_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 15 - 342
Target Start/End: Original strand, 20691628 - 20691955
Alignment:
| Q |
15 |
agatggaacagttgaaaccgaactcgaaccagcggcaaccggtgctacgacagatggatgataaataaccggcgatgatgttgatgaagaagcggtgact |
114 |
Q |
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| T |
20691628 |
agatggaacagttgaaaccgaactcgaaccagcggcaaccggtgctacgacagatggatgataaataaccggcgatgatgttgatgaagaagcggtgact |
20691727 |
T |
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| Q |
115 |
gtaaccggagttagagtggaagatggaacggtgtgtccggcgtgtgaaccacgaccagcaccacggcctgatagtaaagcattgatggatgattgtcgtg |
214 |
Q |
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| T |
20691728 |
gtaaccggagtttgagtggaagatggaacggtgtgtccggcgtgtgaaccacgaccagcaccacggcctgatagtaaagcattgatggatgattgttgtg |
20691827 |
T |
|
| Q |
215 |
aaatcggcggagaaggttggttacggtgagaatcgggatggtttgcaccacggccacggcctgatcctggagcattgagggaagattgttgagaagtcgc |
314 |
Q |
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| T |
20691828 |
aaatcggcggagaaggttggttacggtgagaatcgggatggtttgcaccacggccacggcctgatcctggagcattgacggaagattgttgagaagtcgc |
20691927 |
T |
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| Q |
315 |
cggagaaagttggttacggcgaggatca |
342 |
Q |
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| T |
20691928 |
cggagaaagttggttacggcgaggatca |
20691955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 135 - 257
Target Start/End: Original strand, 20667090 - 20667206
Alignment:
| Q |
135 |
agatggaacggtgtgtccggcgtgtgaaccacgaccagcaccacggcctgatagtaaagcattgatggatgattgtcgtgaaatcggcggagaaggttgg |
234 |
Q |
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| T |
20667090 |
agatggaacggtgtgtccaccgcgtgaaccacgac---caccacgtcctgatcctgcagcattgacggatgact---gtgaaattgccggagaaggttga |
20667183 |
T |
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| Q |
235 |
ttacggtgagaatcgggatggtt |
257 |
Q |
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|| ||| ||| |||||||||||| |
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| T |
20667184 |
ttccggcgaggatcgggatggtt |
20667206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 342 - 371
Target Start/End: Original strand, 20691943 - 20691972
Alignment:
| Q |
342 |
acggcgaggatcataatggtttgcgccacc |
371 |
Q |
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| T |
20691943 |
acggcgaggatcataatggtttgcgccacc |
20691972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 44507795 - 44507662
Alignment:
| Q |
19 |
ggaacagttgaaaccgaactcgaaccagcggcaaccggtgctacgacagatggatgataaataaccggcgatgatgttgatgaagaagcggtgactgtaa |
118 |
Q |
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| T |
44507795 |
ggaacggttgaaaccgaactcgaaccagcaacaaccggtgctacgacggatggatgataactagcctgcgctgatgttgacgaagaagcggtgactgcaa |
44507696 |
T |
|
| Q |
119 |
ccggagttagagtggaagatggaacggtgtgtcc |
152 |
Q |
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| T |
44507695 |
ccggagttggagtggaagatggaacggtgtgtcc |
44507662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 211 - 340
Target Start/End: Complemental strand, 44507657 - 44507525
Alignment:
| Q |
211 |
cgtgaaatcggcggagaaggttggttacggtgagaatcgggatggtttgcaccacggccacggcctgatcctggagcatt---gagggaagattgttgag |
307 |
Q |
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||||||||| ||||||| |||| | ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| || ||| |||||||||| |
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| T |
44507657 |
cgtgaaatctgcggagagggttcgctacggcaagaatcgggatggtttgcaccacggccacggcctgatggtggagcattgacgacggacgattgttgag |
44507558 |
T |
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| Q |
308 |
aagtcgccggagaaagttggttacggcgaggat |
340 |
Q |
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|| || |||| ||||||||||||||||||||| |
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| T |
44507557 |
aaaacgtcggaaaaagttggttacggcgaggat |
44507525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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