View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19999_low_4 (Length: 213)
Name: NF19999_low_4
Description: NF19999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19999_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 67 - 201
Target Start/End: Complemental strand, 32368525 - 32368391
Alignment:
| Q |
67 |
tgaagtttggcctgatgtttccagctactaacaagaaaagagaggctaagctagagggatactctgattcagactgatgtggagatagaatggataggag |
166 |
Q |
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| T |
32368525 |
tgaagtttggcacgatgtttccagctactaacaagaaaggagagtctaagctagagggatactctgattcagaccggtgtggagatagaatggataggag |
32368426 |
T |
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| Q |
167 |
aagcacttatggctacctattcaaattaaatgatg |
201 |
Q |
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| T |
32368425 |
aagtacttctggctgcctattcaaattcaatgatg |
32368391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 32368625 - 32368534
Alignment:
| Q |
22 |
catctcgctgcagctaaaagaatactgagaaatgtgaaagga-ccttgaagtttggcctgatgtttccagctactaacaagaaaagagaggc |
112 |
Q |
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| T |
32368625 |
catctcactgtagctaaaagaatactgagatatgtgaaaggaaccctgaagtttgccctgatgtttccagctactaacaagaaaggagaggc |
32368534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 22 - 190
Target Start/End: Original strand, 26076348 - 26076517
Alignment:
| Q |
22 |
catctcgctgcagctaaaagaatactgagaaatgtgaaagg-accttgaagtttggcctgatgtttccagctactaacaagaaaagagaggctaagctag |
120 |
Q |
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| T |
26076348 |
catctcactgcagctaaaagaatattgagatatgtgaaaggtacattgaagtttggcctgttatttccagctgcaaataaagtaggagaagctgaattag |
26076447 |
T |
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| Q |
121 |
agggatactctgattcagactgatgtggagatagaatggataggagaagcacttatggctacctattcaa |
190 |
Q |
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| T |
26076448 |
agggatactctgattcagactggtgtgaagatataatggataggaagagcacttatggctacctattcaa |
26076517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 22 - 190
Target Start/End: Complemental strand, 4958591 - 4958422
Alignment:
| Q |
22 |
catctcgctgcagctaaaagaatactgagaaatgtgaaagg-accttgaagtttggcctgatgtttccagctactaacaagaaaagagaggctaagctag |
120 |
Q |
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|||||| ||||||| ||||| ||| ||||| |||||||||| || |||||||||||||| | || ||| || | ||||| || |||| ||| | |||| |
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| T |
4958591 |
catctcactgcagcaaaaaggatattgagacatgtgaaaggcacactgaagtttggcctgttattcccaactgcaaacaaagaaggagaagctgaactag |
4958492 |
T |
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| Q |
121 |
agggatactctgattcagactgatgtggagatagaatggataggagaagcacttatggctacctattcaa |
190 |
Q |
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| T |
4958491 |
agggatactctgattcagactggtgtggagatagaatggatagaaaaagcacctttagctacctattcaa |
4958422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 12370874 - 12370945
Alignment:
| Q |
117 |
ctagagggatactctgattcagactgatgtggagatagaatggataggagaagcacttatggctacctattcaa |
190 |
Q |
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| T |
12370874 |
ctagagggatactctgattcagactggtgtggagatagaatgg--aggaaaagcacctctagctacctattcaa |
12370945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 5243245 - 5243310
Alignment:
| Q |
109 |
aggctaagctagagggatactctgattcagactgatgtggagatagaatggataggagaagcactt |
174 |
Q |
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| T |
5243245 |
aggctaagctagaaggatactcagattctgactggtgtggatagagaatggatagaagaagcactt |
5243310 |
T |
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