View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1999_high_17 (Length: 451)

Name: NF1999_high_17
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1999_high_17
NF1999_high_17
[»] chr2 (2 HSPs)
chr2 (1-430)||(42027592-42028021)
chr2 (1-216)||(34040039-34040254)
[»] chr3 (5 HSPs)
chr3 (1-288)||(43102697-43102984)
chr3 (226-430)||(54653479-54653683)
chr3 (217-414)||(13077465-13077662)
chr3 (229-430)||(51825128-51825329)
chr3 (161-430)||(47807225-47807492)
[»] chr7 (4 HSPs)
chr7 (217-430)||(19278742-19278955)
chr7 (226-370)||(27308233-27308377)
chr7 (300-356)||(23484594-23484650)
chr7 (324-382)||(38645464-38645522)
[»] chr1 (1 HSPs)
chr1 (242-430)||(3978840-3979028)
[»] chr4 (3 HSPs)
chr4 (217-417)||(26788928-26789129)
chr4 (242-430)||(3217138-3217326)
chr4 (248-312)||(44502975-44503039)
[»] chr5 (3 HSPs)
chr5 (161-426)||(10085297-10085561)
chr5 (230-368)||(1663996-1664134)
chr5 (226-275)||(27893375-27893424)
[»] chr8 (1 HSPs)
chr8 (301-365)||(42193494-42193558)


Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 42028021 - 42027592
Alignment:
Q  1 tcacaaaataaatgagaatggccaaatgaaaactactcccctaacaatttaagtgattgtctcattgaacatccccaaacaatttctacagcattgtgtt 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||| ||||||    
T  42028021 tcacaaaataaatgagaatggcaaaatgaaaactactcccctaacaatttaagtgattttttcattgaacatcccctaacaatttctacagcactgtgtt 42027922  T
Q  101 gtgttgcatagatgatttccggtgcggttgcagcactgtgttgtttttctatggttcataagtttttgcagaaattaagcagtggttgctggcgtggacg 200  Q
    ||||||| |||||||||||||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| || |||| || ||    
T  42027921 gtgttgcgtagatgatttccggcgtggttgcagcactgtgttgtttttccatggttcataagtttttgcagaaattaagcggtggtcgccggcggggtcg 42027822  T
Q  201 tagtagtttctgacgtggtggtcttcggtgaaagtttttcgatcccaaaataaatttaggggttttgttgcagacattatggggaagaagaaaatcatat 300  Q
    |||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42027821 tagtagtttccgacgcggtggtcgtcggtgaaagtttttcgatcccaaaataaatttagggattttgttgcagacattatggggaagaagaaaatcatat 42027722  T
Q  301 tagtttttcaaatggagatttatggtggccgaaaagtaagagagaaggtggtggttagagtttttaaaattttaccaatctaataatatgtttgtggttt 400  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||    
T  42027721 tagtttttcaaatggagatttgtggtggccggaaagtaagagagaaggtgatgcttagggtttttaaaattttaccaatctaataatatgtttgtggttt 42027622  T
Q  401 tttgaagaggaagatgaaagtagttcaatg 430  Q
    ||||||||||||||||| ||||||||||||    
T  42027621 tttgaagaggaagatgagagtagttcaatg 42027592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 34040039 - 34040254
Alignment:
Q  1 tcacaaaataaatgagaatggccaaatgaaaactactcccctaacaatttaagtgattgtctcattgaacatccccaaacaatttctacagcattgtgtt 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  34040039 tcacaaaataaatgagaatggcaaaatgaaaactactcccctaacaatttaagtgattgtctcattgaacatcccctaacaatttctacagcactgtgtt 34040138  T
Q  101 gtgttgcatagatgatttccggtgcggttgcagcactgtgttgtttttctatggttcataagtttttgcagaaattaagcagtggttgctggcgtggacg 200  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| | |||||| |||| || ||    
T  34040139 gtgttgcgtagatgatttccggcgcggttgcagcactgtgttgtttttccatggttcataaatttttgcagaaattaagcggaggttgccggcggggtcg 34040238  T
Q  201 tagtagtttctgacgt 216  Q
     | ||||||| |||||    
T  34040239 caatagtttccgacgt 34040254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 43102697 - 43102984
Alignment:
Q  1 tcacaaaataaatgagaatggccaaatgaaaactactcccctaacaatttaagtgattgtctcattgaacatccccaaacaatttctacagcattgtgtt 100  Q
    ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  43102697 tcacaaaatcaatgagaatggcaaaatgaaaactactcccctaacaatttaagtgattgtctcattgaacatcccctaacaatttctacagcattgtgtt 43102796  T
Q  101 gtgttgcatagatgatttccggtgcggttgcagcactgtgttgtttttctatggttcataagtttttgcagaaattaagcagtggttgctggcgtggacg 200  Q
    ||||||| |||||||||||||| || |||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||| || |||| || ||    
T  43102797 gtgttgcgtagatgatttccggcgctgttgcaacactgtgttgtttttccatggttcataagtttttgcagaaattaagtagtggtcgccggcgaggtcg 43102896  T
Q  201 tagtagtttctgacgtggtggtcttcggtgaaagtttttcgatcccaaaataaatttaggggttttgttgcagacattatggggaaga 288  Q
     | ||||||| |||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43102897 cactagtttccgacgcggtgatcgtcggtgaaagtttttcgatcccaaaataaatttaggggttttgttgcagacattatggggaaga 43102984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 226 - 430
Target Start/End: Original strand, 54653479 - 54653683
Alignment:
Q  226 cggtgaaagtttttcgatcccaaaataaatttaggggttttgttgcagacattatggggaagaagaaaatcatattagtttttcaaatggagatttatgg 325  Q
    ||||||||||| | | ||||||||||| || ||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||| |||    
T  54653479 cggtgaaagttctccaatcccaaaatagatgtaggggttttgttgcagacatcatgtgtaagaagaaaatcatattagtttttcaaatggagatttgtgg 54653578  T
Q  326 tggccgaaaagtaagagagaaggtggtggttagagtttttaaaattttaccaatctaataatatgtttgtggttttttgaagaggaagatgaaagtagtt 425  Q
    |||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||| |||| |||||||| |||||||||| |||||||    
T  54653579 tggctgaaaagtaagagagaaggtggtggttagggtttttaaaatcttaccaatctaataataagttggtggctttttgaataggaagatgagagtagtt 54653678  T
Q  426 caatg 430  Q
    |||||    
T  54653679 caatg 54653683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 217 - 414
Target Start/End: Original strand, 13077465 - 13077662
Alignment:
Q  217 ggtggtcttcggtgaaagtttttcgatcccaaaataaatttaggggttttgttgcagacattatggggaagaagaaaatcatattagtttttcaaatgga 316  Q
    |||||||  ||||||||||| | |||||||||||||||| || |||||||||||||||||| ||||||||||| ||||||||||||||||||  ||||||    
T  13077465 ggtggtcgccggtgaaagttctccgatcccaaaataaatatatgggttttgttgcagacatgatggggaagaataaaatcatattagttttttgaatgga 13077564  T
Q  317 gatttatggtggccgaaaagtaagagagaaggtggtggttagagtttttaaaattttaccaatctaataatatgtttgtggttttttgaagaggaaga 414  Q
    |||||  |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||| |||| ||||||||||||||||    
T  13077565 gatttgcggtggccggaaagtaagagagaaggtggtggttagggtttttaaaatcttaccaatctaataataagttggtggctttttgaagaggaaga 13077662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 229 - 430
Target Start/End: Original strand, 51825128 - 51825329
Alignment:
Q  229 tgaaagtttttcgatcccaaaataaatttaggggttttgttgcagacattatggggaagaagaaaatcatattagtttttcaaatggagatttatggtgg 328  Q
    ||||| || ||||| |||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  51825128 tgaaatttcttcgaccccaaaataaatataggggttttgttgcagacataatgaggaagaagaaaatcatattagtttttcaaatggagatttgtggtgg 51825227  T
Q  329 ccgaaaagtaagagagaaggtggtggttagagtttttaaaattttaccaatctaataatatgtttgtggttttttgaagaggaagatgaaagtagttcaa 428  Q
    | | ||||||||||||||||||| |||||| ||||||||||| ||| |||||||||||||  ||  ||  ||||||||||||||||| | ||||||||||    
T  51825228 ctggaaagtaagagagaaggtgggggttagggtttttaaaatcttatcaatctaataataacttgatgcctttttgaagaggaagataagagtagttcaa 51825327  T
Q  429 tg 430  Q
    ||    
T  51825328 tg 51825329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 161 - 430
Target Start/End: Complemental strand, 47807492 - 47807225
Alignment:
Q  161 agtttttgcagaaattaagcagtggttgctggcgtggacgtagtagtttctgacgtggtggtcttcggtgaaagtttttcgatcccaaaataaatttagg 260  Q
    |||||||||| ||||||||| ||||| || |||| ||  | || |||||| | || |||||||  ||| ||||||| |||||||||||||||||| || |    
T  47807492 agtttttgcataaattaagcggtggt-gccggcgcggttgcagcagtttccggcgcggtggtcgccggcgaaagttcttcgatcccaaaataaatatacg 47807394  T
Q  261 ggttttgttgcagacattatggggaagaagaaaatcatattagtttttcaaatggagatttatggtggccgaaaagtaagagagaaggtggtggttagag 360  Q
    ||||||||||||||||| |   | ||||||||||||||||||||||||||||| ||||| | ||||||||| ||||| |||||||||||||||||||| |    
T  47807393 ggttttgttgcagacatcacatgaaagaagaaaatcatattagtttttcaaatcgagatatgtggtggccggaaagtgagagagaaggtggtggttaggg 47807294  T
Q  361 tttttaaaattttaccaatctaataatatgtttgtggttttttgaagaggaagatgaaagtagttcaatg 430  Q
    |||||||||| ||| ||||||||||||| ||| |||  |||| |||||||||||||| ||||||||||||    
T  47807293 tttttaaaatctta-caatctaataataagttggtgccttttcgaagaggaagatgagagtagttcaatg 47807225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 217 - 430
Target Start/End: Complemental strand, 19278955 - 19278742
Alignment:
Q  217 ggtggtcttcggtgaaagtttttcgatcccaaaataaatttaggggttttgttgcagacattatggggaagaagaaaatcatattagtttttcaaatgga 316  Q
    |||||||  ||||||||||| | | ||||||||||| || |||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  19278955 ggtggtcgccggtgaaagttctccaatcccaaaatagatgtaggagttttgttgcagacatcatgggtaagaagaaaatcatattagtttttcaaatgga 19278856  T
Q  317 gatttatggtggccgaaaagtaagagagaaggtggtggttagagtttttaaaattttaccaatctaataatatgtttgtggttttttgaagaggaagatg 416  Q
    ||||| ||||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||| |||| ||||||||||||||||||    
T  19278855 gatttgtggtggccggaaagtaagagagaaggtggtggttagggtttttaaaatcttaccaatctaataataagttggtggctttttgaagaggaagatg 19278756  T
Q  417 aaagtagttcaatg 430  Q
    | ||||||||||||    
T  19278755 agagtagttcaatg 19278742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 226 - 370
Target Start/End: Original strand, 27308233 - 27308377
Alignment:
Q  226 cggtgaaagtttttcgatcccaaaataaatttaggggttttgttgcagacattatggggaagaagaaaatcatattagtttttcaaatggagatttatgg 325  Q
    ||||||||||| ||| ||||| |||||||||  ||||||||||||  ||||| |||||||||| ||| || |  |||||||||||||  ||||   ||||    
T  27308233 cggtgaaagttcttcaatcccgaaataaattggggggttttgttgttgacatcatggggaagatgaatattaatttagtttttcaaaatgagacccatgg 27308332  T
Q  326 tggccgaaaagtaagagagaaggtggtggttagagtttttaaaat 370  Q
    ||||||||||    || |||||||||||||| ||| |||| ||||    
T  27308333 tggccgaaaatggggaaagaaggtggtggttggagattttgaaat 27308377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 300 - 356
Target Start/End: Original strand, 23484594 - 23484650
Alignment:
Q  300 ttagtttttcaaatggagatttatggtggccgaaaagtaagagagaaggtggtggtt 356  Q
    ||||||| |||||||| | || | |||||||| ||||||||||||||||||||||||    
T  23484594 ttagtttctcaaatggtggttcaaggtggccggaaagtaagagagaaggtggtggtt 23484650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 324 - 382
Target Start/End: Complemental strand, 38645522 - 38645464
Alignment:
Q  324 ggtggccgaaaagtaagagagaaggtggtggttagagtttttaaaattttaccaatcta 382  Q
    ||||||||||||||||||||||| ||||| ||| | |||||| ||| || |||||||||    
T  38645522 ggtggccgaaaagtaagagagaatgtggtagttggggtttttgaaacttcaccaatcta 38645464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 242 - 430
Target Start/End: Original strand, 3978840 - 3979028
Alignment:
Q  242 atcccaaaataaatttaggggttttgttgcagacattatggggaagaagaaaatcatattagtttttcaaatggagatttatggtggccgaaaagtaaga 341  Q
    ||||||||||| || ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||    
T  3978840 atcccaaaatagatgtaggggttttgttgcagacatcatgggtaagaagaaaatcatattagtttttcaaatggagatttgtggtggccggaaagtagga 3978939  T
Q  342 gagaaggtggtggttagagtttttaaaattttaccaatctaataatatgtttgtggttttttgaagaggaagatgaaagtagttcaatg 430  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||| ||| |||| ||||||||||||||||||| ||||||||||||    
T  3978940 gagaaggtggtggttagggtttttaaaatcttaccaatctaataataagttggtggctttttgaagaggaagatgagagtagttcaatg 3979028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 8e-65; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 217 - 417
Target Start/End: Complemental strand, 26789129 - 26788928
Alignment:
Q  217 ggtggtcttcggtgaaagtttttcgatcccaaaa-taaatttaggggttttgttgcagacattatggggaagaagaaaatcatattagtttttcaaatgg 315  Q
    ||||||| ||| |||||||| | ||||||||||| ||||| ||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||| ||    
T  26789129 ggtggtcgtcgatgaaagttatccgatcccaaaaataaatataggggttttgttgcagacataatggagaagaagaaaatcatattaatttttcaaacgg 26789030  T
Q  316 agatttatggtggccgaaaagtaagagagaaggtggtggttagagtttttaaaattttaccaatctaataatatgtttgtggttttttgaagaggaagat 415  Q
    |||||| ||||||||| ||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||    
T  26789029 agatttgtggtggccggaaaataagagagaaggtggcggttagggtttttaaaattttaccaatctaataataagttggtggctttttgaagaggaagat 26788930  T
Q  416 ga 417  Q
    ||    
T  26788929 ga 26788928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 242 - 430
Target Start/End: Original strand, 3217138 - 3217326
Alignment:
Q  242 atcccaaaataaatttaggggttttgttgcagacattatggggaagaagaaaatcatattagtttttcaaatggagatttatggtggccgaaaagtaaga 341  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||| |||||    
T  3217138 atcccaaaataaatataggggttttgttgcaaacattatggggaagaagaaaatcatattagtttttcaaatagagatttgtggtggccggaaaataaga 3217237  T
Q  342 gagaaggtggtggttagagtttttaaaattttaccaatctaataatatgtttgtggttttttgaagaggaagatgaaagtagttcaatg 430  Q
    |||||||||   ||||| ||||||||||| ||| ||||||||||||| ||| |||  ||||||||||||||||| | ||||||||||||    
T  3217238 gagaaggtgagagttagggtttttaaaatcttaacaatctaataataagttggtgcctttttgaagaggaagataagagtagttcaatg 3217326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 248 - 312
Target Start/End: Original strand, 44502975 - 44503039
Alignment:
Q  248 aaataaatttaggggttttgttgcagacattatggggaagaagaaaatcatattagtttttcaaa 312  Q
    ||||||| ||||||||||||||| ||| ||||||||||| ||||| ||||  ||||||| |||||    
T  44502975 aaataaacttaggggttttgttgaagaaattatggggaataagaatatcaatttagtttctcaaa 44503039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 103; Significance: 4e-51; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 161 - 426
Target Start/End: Original strand, 10085297 - 10085561
Alignment:
Q  161 agtttttgcagaaattaagcagtggttgctggcgtggacgtagtagtttctgacgtggtggtcttcggtgaaagtttttcgatcccaaaataaatttagg 260  Q
    ||||||||||||||||||||  ||||  | |||||||  | || |||||| | ||| ||||||  ||||||||||| |  ||||||||||||||| ||||    
T  10085297 agtttttgcagaaattaagcgatggtcaccggcgtggttgcagcagtttccggcgtagtggtcgccggtgaaagttctctgatcccaaaataaatatagg 10085396  T
Q  261 ggttttgttgcagacattatggggaagaagaaaatcatattagtttttcaaatggagatttatggtggccgaaaagtaagagagaaggtg-gtggttaga 359  Q
    | ||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||| ||||||||| |||||||||||||||||| | | ||||     
T  10085397 g-ttttgttgcagacatcatggggaagaagaaaatcatattagtttttcaaataaagatttgtggtggccggaaagtaagagagaaggtgagagtttag- 10085494  T
Q  360 gtttttaaaattttaccaatctaataatatgtttgtggttttttgaagaggaagatgaaagtagttc 426  Q
    |||||| |||| ||| ||||||||||||| ||| |||  |||||||||||||| || | ||||||||    
T  10085495 gttttttaaatcttaacaatctaataataagttggtgcctttttgaagaggaatataagagtagttc 10085561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 230 - 368
Target Start/End: Original strand, 1663996 - 1664134
Alignment:
Q  230 gaaagtttttcgatcccaaaataaatttaggggttttgttgcagacattatggggaagaagaaaatcatattagtttttcaaatggagatttatggtggc 329  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||| |  |||||||||||||||||||||||||||||||| ||||||| |||| |     
T  1663996 gaaagttcttcgatcccaaaataaatataggggttttgttgcagacatcacagggaagaagaaaatcatattagtttttcaaattgagatttgtggtagt 1664095  T
Q  330 cgaaaagtaagagagaaggtggtggttagagtttttaaa 368  Q
    || |||||||||||||||||||||||||  |||||||||    
T  1664096 cggaaagtaagagagaaggtggtggttatggtttttaaa 1664134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 275
Target Start/End: Complemental strand, 27893424 - 27893375
Alignment:
Q  226 cggtgaaagtttttcgatcccaaaataaatttaggggttttgttgcagac 275  Q
    ||||||||||| | ||||||||||||| || | |||||||||||||||||    
T  27893424 cggtgaaagttctccgatcccaaaatatatattggggttttgttgcagac 27893375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 301 - 365
Target Start/End: Complemental strand, 42193558 - 42193494
Alignment:
Q  301 tagtttttcaaatggagatttatggtggccgaaaagtaagagagaaggtggtggttagagttttt 365  Q
    |||||||||| |||| | |  |||||||| | |||||||||||||||||||||||| | ||||||    
T  42193558 tagtttttcagatggtggtccatggtggctggaaagtaagagagaaggtggtggttggggttttt 42193494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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