View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1999_high_19 (Length: 430)
Name: NF1999_high_19
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 17 - 413
Target Start/End: Complemental strand, 44101061 - 44100665
Alignment:
| Q |
17 |
cagagaggaaaggatggtaaacgcctttgagcgcataacaagcgcagatcgaagcagagacttgtgctgcaatgtaggctggaacatgtgcccatggaaa |
116 |
Q |
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| T |
44101061 |
cagagaggaaaggatggtaaacgcctttgagcgcataacaagcacagatcgaagcagagacttgtgctgcaatgtaggctggaacatgtgcccagggaaa |
44100962 |
T |
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| Q |
117 |
atggcgaaatgccgcgaaggcaatggtgagtgatggattgagatgtgcacctgagatatgaccaattgagagaataatgaacatgaccgttaatccagca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || | ||||||| |
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| T |
44100961 |
atggcgaaatgccgcgaaggcaatggtgagtgatggattgagatgagcacctgagatatgaccaattgagagaataatgaacatgactgtcagtccagca |
44100862 |
T |
|
| Q |
217 |
caagctgcatttcccataagagtttctactccattgtatttgttgttcactattggtcctgctgttgctgcatatattaatatgaacgttcctacaaact |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44100861 |
caagctgcatttcccataagagtttctactccattgtatttgttgttcactattggtcctgctgttgctgcatatattaatatgaacgttcctacaaact |
44100762 |
T |
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| Q |
317 |
ctgctccaatctgtgacacattttaacattcaaaattcaatattaattttacttttcctttttcattannnnnnnttaaaataatgtgacaaataat |
413 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
44100761 |
ctgctccaatctgtgacacattttaacattccaaattcaatattaattttacttttcctttttcattagggggggttaaaataatgtgacgaataat |
44100665 |
T |
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