View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1999_high_2 (Length: 944)

Name: NF1999_high_2
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1999_high_2
NF1999_high_2
[»] chr4 (1 HSPs)
chr4 (80-931)||(2578794-2579616)


Alignment Details
Target: chr4 (Bit Score: 502; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 80 - 931
Target Start/End: Original strand, 2578794 - 2579616
Alignment:
Q  80 aattttaatatttcaaaagattccttcttcatattttattagaactagaatttcaacacattccttcttagtagtattttattagagctagaacttaact 179  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2578794 aattttaatatttcaaaagattccttcttcatattttattagaactagaatttcaacacattccttcttagtagtattttattagagctagaacttaact 2578893  T
Q  180 ttggtatgaataaaacatagttatactattgaaattttggtggttatgcaggtgcagggggtgggtggtgagtaccttagtatgggtatccatccacttt 279  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||    
T  2578894 ttggtatgaataaaacatagttatactattgaaattttggtggttatgcaggtgcagg----gggtggtgagtaccttagtatgggtatccatccacttt 2578989  T
Q  280 tacgagtaattatccatgatgttttttgtaaggatttcaacgaatatgattccaatattatctatcatccctaatagaaaacaattgaatttttaagcat 379  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2578990 tacgagtaattatccatgatgttttttttaaggaattcaacgaatatgattccaatattatctatcatccctaatagaaaacaattgaatttttaagcat 2579089  T
Q  380 atttcttgtatactttttccatctccaa-nnnnnnnnnnnnnnnaatgtcattattttatcacttttgcatagatgaatttttatnnnnnnnngttatag 478  Q
    | ||||||||||||||||||||||||||                |||||||||||||||||||||||||||||||||||||||||        |||||||    
T  2579090 a-ttcttgtatactttttccatctccaatttttcgtttttttttaatgtcattattttatcacttttgcatagatgaatttttat--aaaaaagttatag 2579186  T
Q  479 tatacaatctttctctcgactgattaaaattcatggatccattcttgttattgatcaatccattcttgttattgatcaatgcacttgtgtcactgttggg 578  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||                     |||||||||||| ||||||||||    
T  2579187 tatacaatctttctctccactgattaaaattcatggatccattcttgttattgatc---------------------aatgcacttgtgccactgttggg 2579265  T
Q  579 aattctctattttcttcatgataggttggaaagattctttgccacacttgaaacatggtaatgatcatctttcaattaattaaggctannnnnnnnnctt 678  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||         |||    
T  2579266 aattctctattttcttcatgataggttggaaagattctttgccacacttgaaacatggtaatgatcatctttcaattaattaaggtta--tttttttctt 2579363  T
Q  679 tgagaatgaaaagtgacacaattcctttgtataatccactggttgtccaattcattatgagatgtggactgattaaaattcgacta-nnnnnnnngtggt 777  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||         || ||    
T  2579364 agagaatgaaaagtgacacaattcctttgtataatccactggttgtccaattcattatgaaatgtggagtgattagaattcgactattttttttggtagt 2579463  T
Q  778 tcgaccatgtgcgttgtttacagactattgtgtaannnnnnnctctactgttttttcgactagttttatagtctaattgcgctgtaattgatagcttttt 877  Q
    | |||||||||||||||||||| ||| ||||||||        |||| ||||||||||| |||||||||||||||| |||| |||||||||| || ||||    
T  2579464 ttgaccatgtgcgttgtttacaaactgttgtgtaattttttt-tctattgttttttcgattagttttatagtctaactgcggtgtaattgatggcctttt 2579562  T
Q  878 agtctcttccgatacttcttgtgctctagagacagctttggtttttagtataat 931  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  2579563 agtctcttccgatacttcttgtgctctagagacagctttagtttttagcataat 2579616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University