View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1999_high_25 (Length: 388)
Name: NF1999_high_25
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Original strand, 40457841 - 40458197
Alignment:
| Q |
18 |
atttgtacatcatcatcgatcaaatcatagtctcaaccaagaggacggggagaaccgtgagcttctacctttagaaggcagtggtttatctttgtaaagt |
117 |
Q |
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| T |
40457841 |
atttttacatcatcatcgatcaaatcatagtctcaaccaagaggacggggagaaccgtgagcttctacttttagaaggcagtggcttatctttgtaaagt |
40457940 |
T |
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| Q |
118 |
atcttttagaagattagtttaccattgaccacctatcaaagtgatgcacataaaatttaccaaaaataaacaccaactcagctagccttctatagaatag |
217 |
Q |
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| T |
40457941 |
atcttttagaagattagtttaccattgaccacctatcaaagtgatccacataaaatttaccaaaaataaacaccaactcagctagccttctatagaatag |
40458040 |
T |
|
| Q |
218 |
aatagaattgtacatactcaattccataattccatccagcaatagaggtgacttgagacaaagcttgctgccattcccacatcctgcgagggtagtcttt |
317 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40458041 |
aatagaattgtacatacttaattccataattccatccagcaatagaggtgacttgagacaaagcttgctgccattcccacatcctgcgagggtagtcttt |
40458140 |
T |
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| Q |
318 |
aaacctttctcggaacttcaatatggctttgctactactaccatacttacatctctg |
374 |
Q |
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| T |
40458141 |
aaacctttctcggaacttcaatatggctttgctgctactaccatacttacatctctg |
40458197 |
T |
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