View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1999_high_28 (Length: 370)
Name: NF1999_high_28
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_high_28 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 206 - 363
Target Start/End: Complemental strand, 12100526 - 12100369
Alignment:
| Q |
206 |
agctctaatgaaacttatctacttgagaaaacctgttattttgggtagaaacatgaaagaactttaaaaggtgatgaataagcagagaattacctaaaat |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12100526 |
agctctaatgaaacttatctacttgagaaaacctgttattttgggtagaaacttgaaagaaccttaaaaggtgatgaataagcagagaattacctaaaat |
12100427 |
T |
|
| Q |
306 |
aatactttaaattttagccatagatttgctacggaatgactgtgatatacctatgcta |
363 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
12100426 |
aatactttaaattttagccatagatttgctacggaataactgtgatatacctaagcta |
12100369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 81 - 169
Target Start/End: Complemental strand, 12100674 - 12100586
Alignment:
| Q |
81 |
taaactaaaaacaggatagtggttctacctaagcattaacatgatttctttttctaactttgaattgtttgaatcaggaagtttggtta |
169 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12100674 |
taaactaaaaacaggatagtggttctacctaagcattaacataatttctttttctaactttgctttgtttgaatcaggaagtttggtta |
12100586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 12100840 - 12100760
Alignment:
| Q |
1 |
ttatttttctaatgtattcatcactgcttcctatgtgggtactgactccaaccattttcgttattgttcttatagcttgtt |
81 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12100840 |
ttatttttctaatgtattcatgtctgcttcctatgtggggactgactccaaccattttcgttattgttcttatagcttgtt |
12100760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University