View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1999_high_3 (Length: 678)
Name: NF1999_high_3
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 575; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 16 - 661
Target Start/End: Complemental strand, 115210 - 114551
Alignment:
| Q |
16 |
attaaattctaatgaatctaacaagttccatgtaactgttgtgagataattcttgtttatgaataattacttttacttgtaatacaagtaagcagtgaat |
115 |
Q |
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| T |
115210 |
attaaattctaatgaatctaacaagttccatgtaactgttgtgagataattcttgtttatgaataattacttttacttgtaatacaagtaagcagtgaat |
115111 |
T |
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| Q |
116 |
cgattcgtgaattgattcatattgtgcaattagctgttttagttagtatgctagtgacttgttgaacaagtcagtggagttagttagtttattgaggcag |
215 |
Q |
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| T |
115110 |
cgattcgtgaattgattcatattgtgcaattagctgttttagttagtatgctagtgacttgttgaacaagtcagtggagttagttagtttattgaggcag |
115011 |
T |
|
| Q |
216 |
ttagttggattgcgtaatcgtgtcatgaactttgtatcatgattcatattttcatgtaattcatccattt-----cattagtttaattcatcacaatcat |
310 |
Q |
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| T |
115010 |
ttagttggatttcgtaatcgtgtcatgaactttgtatcatgattcatattttcatgtaattcatccatttcatttcattagtttaattcatcacaatcat |
114911 |
T |
|
| Q |
311 |
cctctaaactcttctacgatttaggttcatttttaattttataataacacaacaaacaaatatcttttctgaaaacataaatttcataagctcaaaaagt |
410 |
Q |
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| T |
114910 |
cctctaaactcttctacgatttaggttcatttttaattttataataacacaacaaacaaatatcttttctgaaaacataaatttcataagctcaaaaagt |
114811 |
T |
|
| Q |
411 |
tgaaatagcaacataaaaagaaaacataatttgcatctctctagtattagagacaccaagc---aagcataa------agacgtacgtaccttttgcctc |
501 |
Q |
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| T |
114810 |
tgaaatagcaacataaaaagaaaacataatttgtatctctctagtattagagacaccaagcataaagactaatttcatatacgtacgtaccttttgcctc |
114711 |
T |
|
| Q |
502 |
gtttggaatgatcagatctcgaatgatgttgttgtagaaaggagggttgtgaatctacaaccttgatttctggagaatgttgaagaatagttttattatt |
601 |
Q |
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| T |
114710 |
gtttggaatgatcagatctcgaatgatgttgttgtagaaaggagggttgtgaatctacaaccttcctttctggagaatgttgaagaatagttttattatt |
114611 |
T |
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| Q |
602 |
taagtatgctaaggagtcacttgatgatcttctatgagtcttgttgctgcatacagtact |
661 |
Q |
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| T |
114610 |
taagtatgctaaggagtcacttgatgatcttctatgagtcttgttgctgcatacagtact |
114551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 88; Significance: 6e-42; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 36329907 - 36330092
Alignment:
| Q |
16 |
attaaattctaatgaatctaacaagttccatgtaactgttgtgagataattcttgtttatgaataattacttttacttgtaatacaagtaagcagtgaat |
115 |
Q |
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||||| |||||| ||||||||||||||| || ||| |||||||||||||||| | |||| |||||||||| ||||||| |||||||| ||||||| |
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| T |
36329907 |
attaagttctaacgaatctaacaagttctatctaattgttgtgagataattcatatttaggaataattac------ttgtaattcaagtaagtagtgaat |
36330000 |
T |
|
| Q |
116 |
cgattcgtgaattgattcatattgtgcaattagctgttttagttagtatgctagtgacttgttgaacaagtcagtggagttagttagtttattgag |
211 |
Q |
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| T |
36330001 |
cgattcatgaattgatttatattgtgcaaataactgttttagttagt----tagtgacttgttgaacaagtcagaggagttacttagtttgttgag |
36330092 |
T |
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