View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1999_high_32 (Length: 343)
Name: NF1999_high_32
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_high_32 |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 331
Target Start/End: Complemental strand, 37352957 - 37352645
Alignment:
| Q |
19 |
tttgtgtttcacaagttttctcctttgaaatctgggcttgtagattttgattatttgagctagatttcttgtcttttgttggagaaaatgaaatagttga |
118 |
Q |
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| T |
37352957 |
tttgtgtttcacaagttttctcctttgaaatctgggcttgtagattttgattatttgagctagatttcttgtcttttgttggagaaaatgaaatagttga |
37352858 |
T |
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| Q |
119 |
ccaaaacttgttgttacttcttccttcacttttgcttctaagaaaatccttcaagaaaacccatcttttagagcttcttccagctgaagaagatctagaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37352857 |
ccaaaacttgttgttacttcttccttcacttttgcttctaagaaaatccttcaagaaaacccatcttttagagcttcttccagctgaagaagatctagaa |
37352758 |
T |
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| Q |
219 |
gatgaagctgaatctaaaggtgttatctctattctttctaaacccatttcatcaactttaacattctccatttcagaacaatcatttccattttcattat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37352757 |
gatgaagctgaatctaaaggtgttatctctattctttctaaacccatttcatcaaccttaacattctccatttcagaacaatcatttccattttcattat |
37352658 |
T |
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| Q |
319 |
ttttgttgttcat |
331 |
Q |
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||||||||||||| |
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| T |
37352657 |
ttttgttgttcat |
37352645 |
T |
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