View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1999_high_34 (Length: 336)
Name: NF1999_high_34
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_high_34 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 113 - 324
Target Start/End: Original strand, 35977699 - 35977910
Alignment:
| Q |
113 |
ttcttcacaataatcttatatatgttcatgtgataaccatagtagtgggagtgaaagtgaaaatgtacaagtcgaggctgcaggagttttgtcaccggag |
212 |
Q |
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| T |
35977699 |
ttcttcacaataatcttatatatgttcatgtgataaccatagtagtgggagtgaaagtgaaaatgtacaagtcgaggctgcaggagttttgtcaccggag |
35977798 |
T |
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| Q |
213 |
aaagtggagtttgcctgaatactcttccatatatgttgatggtccaccacacaatccaagttttaagggctctgtctttgtcaatggtttaacctttact |
312 |
Q |
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| T |
35977799 |
aaagtggagtttgcctgaatactcttccatatatgttgatggtccaccacacaatccaagttttaagggctctgtctttgtcaatggtttaacctttact |
35977898 |
T |
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| Q |
313 |
tcttctgatatt |
324 |
Q |
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|||||||||||| |
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| T |
35977899 |
tcttctgatatt |
35977910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 168 - 315
Target Start/End: Original strand, 35967567 - 35967714
Alignment:
| Q |
168 |
agtgaaaatgtacaagtcgaggctgcaggagttttgtcaccggagaaagtggagtttgcctgaatactcttccatatatgttgatggtccaccacacaat |
267 |
Q |
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| T |
35967567 |
agtgaaaatgaataagatgaggctgcaggagctttgtcaccaaagaaagtggagtttgcctaagtactctgccttgaatgtcgatggtccaccacacaaa |
35967666 |
T |
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| Q |
268 |
ccaagttttaagggctctgtctttgtcaatggtttaacctttacttct |
315 |
Q |
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| T |
35967667 |
ccaagctttaagggctctgtctttgtcaatggtttaacctttacttct |
35967714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 89
Target Start/End: Original strand, 35977629 - 35977700
Alignment:
| Q |
18 |
acatgcaaccgttcatcatgtactactaacattcacatggttaatattgttagtttcacatggttcctcatt |
89 |
Q |
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| T |
35977629 |
acatgcaaccgttcatcatgtactactaacattcacatggttaatattgttagtttcacatggttcctcatt |
35977700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 160 - 322
Target Start/End: Original strand, 35955125 - 35955287
Alignment:
| Q |
160 |
ggagtgaaagtgaaaatgtacaagtcgaggctgcaggagttttgtcaccggagaaagtggagtttgcctgaatactcttccatatatgttgatggtccac |
259 |
Q |
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| T |
35955125 |
ggagtgtaagtgaaaatgcacaagtcaaaactgcaggagctgtgtcaccggagacggtggagtttgcctaagtattctgcctttcatgttgacggtccac |
35955224 |
T |
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| Q |
260 |
cacacaatccaagttttaagggctctgtctttgtcaatggtttaacctttacttcttctgata |
322 |
Q |
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| T |
35955225 |
cacacaatccaagctttaagggctctgtttttgtgaatggccttacctttacttcttctgata |
35955287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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