View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1999_high_36 (Length: 317)

Name: NF1999_high_36
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1999_high_36
NF1999_high_36
[»] chr4 (5 HSPs)
chr4 (102-306)||(51994812-51995016)
chr4 (15-62)||(51995027-51995074)
chr4 (27-61)||(44378200-44378234)
chr4 (27-61)||(46944700-46944734)
chr4 (24-62)||(55892138-55892176)
[»] chr1 (7 HSPs)
chr1 (102-306)||(50447043-50447247)
chr1 (124-306)||(7841481-7841663)
chr1 (143-306)||(27076780-27076943)
chr1 (15-62)||(27076659-27076706)
chr1 (15-62)||(50447290-50447337)
chr1 (102-139)||(27076719-27076756)
chr1 (27-61)||(5204625-5204659)
[»] chr7 (3 HSPs)
chr7 (183-299)||(31491579-31491696)
chr7 (27-61)||(46573768-46573802)
chr7 (22-62)||(32356915-32356955)
[»] chr5 (4 HSPs)
chr5 (102-174)||(24535825-24535897)
chr5 (197-252)||(17168912-17168967)
chr5 (27-62)||(28246680-28246715)
chr5 (157-227)||(24535744-24535814)
[»] scaffold0444 (1 HSPs)
scaffold0444 (27-61)||(923-957)
[»] chr3 (1 HSPs)
chr3 (27-61)||(12710652-12710686)
[»] chr6 (1 HSPs)
chr6 (24-61)||(13311972-13312009)


Alignment Details
Target: chr4 (Bit Score: 169; Significance: 1e-90; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 102 - 306
Target Start/End: Complemental strand, 51995016 - 51994812
Alignment:
Q  102 caattgacattcccttctatttaatttatataaatgttgacatgtttataattttaagagattgtctaaagatatggtagtgtactgaatcaagggtaaa 201  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||    
T  51995016 caattgacactcccttctatttaatttatataaatgtttacatgtttataattttaagagattgtctaaatatatggtattgtactgtatcaagggtaaa 51994917  T
Q  202 tttcaagaactagtaaaatataaaattgataaacaaggcaagaccattattccttgtcttcaattacatgtttagatttataagaaaaatgcaatccact 301  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| |||    
T  51994916 tttcaagaaccagtaaaatataaaattgataaacaaggcaagaccattattccttgtcttccattacatgtttacatttataagaaaaatgcaatcaact 51994817  T
Q  302 ttcat 306  Q
    |||||    
T  51994816 ttcat 51994812  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 51995074 - 51995027
Alignment:
Q  15 atgtttgactcaactcgtttggttcatgaactagctcgatatatatat 62  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  51995074 atgtttgactcgactcgtttggttcatgaaccagctcgatatatatat 51995027  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 44378234 - 44378200
Alignment:
Q  27 actcgtttggttcatgaactagctcgatatatata 61  Q
    |||||| ||||||||||||||||||||||||||||    
T  44378234 actcgtctggttcatgaactagctcgatatatata 44378200  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 46944700 - 46944734
Alignment:
Q  27 actcgtttggttcatgaactagctcgatatatata 61  Q
    ||||||||||||||||||| |||||||||||||||    
T  46944700 actcgtttggttcatgaaccagctcgatatatata 46944734  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 55892138 - 55892176
Alignment:
Q  24 tcaactcgtttggttcatgaactagctcgatatatatat 62  Q
    |||| ||||||||||||||||| ||||||||||||||||    
T  55892138 tcaattcgtttggttcatgaaccagctcgatatatatat 55892176  T

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Target: chr1 (Bit Score: 161; Significance: 7e-86; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 102 - 306
Target Start/End: Complemental strand, 50447247 - 50447043
Alignment:
Q  102 caattgacattcccttctatttaatttatataaatgttgacatgtttataattttaagagattgtctaaagatatggtagtgtactgaatcaagggtaaa 201  Q
    ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||||||    
T  50447247 caattgacactcccttctatttaatttatataaatgtttacatgtttataattttaagagattgtctaaagatagggtattgtactgtatcaagggtaaa 50447148  T
Q  202 tttcaagaactagtaaaatataaaattgataaacaaggcaagaccattattccttgtcttcaattacatgtttagatttataagaaaaatgcaatccact 301  Q
    ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||| |||    
T  50447147 tttcgggaactagtaaaatataaaattgataaacaaggcaagaccattattccttgtcttctattacatgtttacatttataagaaaattgcaatcaact 50447048  T
Q  302 ttcat 306  Q
    |||||    
T  50447047 ttcat 50447043  T

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Target: chr1; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 124 - 306
Target Start/End: Complemental strand, 7841663 - 7841481
Alignment:
Q  124 aatttatataaatgttgacatgtttataattttaagagattgtctaaagatatggtagtgtactgaatcaagggtaaatttcaagaactagtaaaatata 223  Q
    |||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||    
T  7841663 aatttatataaatgtttacatgtttataattgtaagagattgtgtaaagatatggtattgtactgtatcaacggtaaatttcaagaactagtaaaatata 7841564  T
Q  224 aaattgataaacaaggcaagaccattattccttgtcttcaattacatgtttagatttataagaaaaatgcaatccactttcat 306  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||    
T  7841563 aaattgataaacaaggcaggaccattattccttgtcttccattacatgtttacatttataagaaaaatgcaatcaactttcat 7841481  T

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Target: chr1; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 143 - 306
Target Start/End: Original strand, 27076780 - 27076943
Alignment:
Q  143 atgtttataattttaagagattgtctaaagatatggtagtgtactgaatcaagggtaaatttcaagaactagtaaaatataaaattgataaacaaggcaa 242  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  27076780 atgtttataattttaagagattgtctaaagatacggtattgtactggatgaagggtaaatttcaagaactggtaaaatataaaattgataaacaaggcaa 27076879  T
Q  243 gaccattattccttgtcttcaattacatgtttagatttataagaaaaatgcaatccactttcat 306  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||    
T  27076880 gaccattattccttgtcttccattacatgtttacatttataagaaaaatgcaatcaactttcat 27076943  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 62
Target Start/End: Original strand, 27076659 - 27076706
Alignment:
Q  15 atgtttgactcaactcgtttggttcatgaactagctcgatatatatat 62  Q
    ||||||||||||| ||||||||||||||||| | ||||||||||||||    
T  27076659 atgtttgactcaattcgtttggttcatgaaccatctcgatatatatat 27076706  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 62
Target Start/End: Complemental strand, 50447337 - 50447290
Alignment:
Q  15 atgtttgactcaactcgtttggttcatgaactagctcgatatatatat 62  Q
    ||||||||||| ||||||||||||||||||| ||||| ||||||||||    
T  50447337 atgtttgactcgactcgtttggttcatgaaccagctcaatatatatat 50447290  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 27076719 - 27076756
Alignment:
Q  102 caattgacattcccttctatttaatttatataaatgtt 139  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  27076719 caattgacactcccttctatttaatttatataaatgtt 27076756  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 5204625 - 5204659
Alignment:
Q  27 actcgtttggttcatgaactagctcgatatatata 61  Q
    ||||||||||||||||||| |||||||||||||||    
T  5204625 actcgtttggttcatgaaccagctcgatatatata 5204659  T

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Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 183 - 299
Target Start/End: Complemental strand, 31491696 - 31491579
Alignment:
Q  183 gtactgaatcaagggtaaatttcaagaactagtaaaa-tataaaattgataaacaaggcaagaccattattccttgtcttcaattacatgtttagattta 281  Q
    |||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||   ||| |  ||||||| |||| ||| |    
T  31491696 gtactgtatcaatggtaaatttcaagaactagtaaaaatataaaattgataaacaaggcaagaccattattctcggtcattcattacatatttacattca 31491597  T
Q  282 taagaaaaatgcaatcca 299  Q
    ||||||||||||||||||    
T  31491596 taagaaaaatgcaatcca 31491579  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 46573768 - 46573802
Alignment:
Q  27 actcgtttggttcatgaactagctcgatatatata 61  Q
    ||||||||||||||||||| |||||||||||||||    
T  46573768 actcgtttggttcatgaaccagctcgatatatata 46573802  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 32356955 - 32356915
Alignment:
Q  22 actcaactcgtttggttcatgaactagctcgatatatatat 62  Q
    |||| |||| |||||||||||||| ||||||||||||||||    
T  32356955 actcgactcatttggttcatgaaccagctcgatatatatat 32356915  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 174
Target Start/End: Complemental strand, 24535897 - 24535825
Alignment:
Q  102 caattgacattcccttctatttaatttatataaatgttgacatgtttataattttaagagattgtctaaagat 174  Q
    ||||||||||| |||||| |||| |||||||||||||| |||| ||||| ||||||| ||||| |||||||||    
T  24535897 caattgacatttccttctttttactttatataaatgtttacatatttatgattttaaaagattatctaaagat 24535825  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 17168912 - 17168967
Alignment:
Q  197 gtaaatttcaagaactagtaaaatataaaattgataaacaaggcaagaccattatt 252  Q
    |||||||| ||||||||| |||||||||||| || | |||||||||||||||||||    
T  17168912 gtaaattttaagaactagcaaaatataaaatcgagacacaaggcaagaccattatt 17168967  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 27 - 62
Target Start/End: Complemental strand, 28246715 - 28246680
Alignment:
Q  27 actcgtttggttcatgaactagctcgatatatatat 62  Q
    ||||||||||||||||||| ||||||||||||||||    
T  28246715 actcgtttggttcatgaaccagctcgatatatatat 28246680  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 24535814 - 24535744
Alignment:
Q  157 aagagattgtctaaagatatggtagtgtactgaatcaagggtaaatttcaagaactagtaaaatataaaat 227  Q
    |||| ||| ||||||||||| ||| || | || ||||| | ||||||||||||| ||||||||||||||||    
T  24535814 aagaaattatctaaagatattgtattgaattgtatcaatgataaatttcaagaattagtaaaatataaaat 24535744  T

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Target: scaffold0444 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 61
Target Start/End: Original strand, 923 - 957
Alignment:
Q  27 actcgtttggttcatgaactagctcgatatatata 61  Q
    |||||| ||||||||||||||||||||||||||||    
T  923 actcgtctggttcatgaactagctcgatatatata 957  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 61
Target Start/End: Complemental strand, 12710686 - 12710652
Alignment:
Q  27 actcgtttggttcatgaactagctcgatatatata 61  Q
    ||||||||||||||||||| |||||||||||||||    
T  12710686 actcgtttggttcatgaaccagctcgatatatata 12710652  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 13312009 - 13311972
Alignment:
Q  24 tcaactcgtttggttcatgaactagctcgatatatata 61  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  13312009 tcaactcgtttggttcatgaaccagctcgacatatata 13311972  T

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