View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1999_high_44 (Length: 294)
Name: NF1999_high_44
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_high_44 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 11 - 280
Target Start/End: Complemental strand, 31649947 - 31649678
Alignment:
| Q |
11 |
catcatcaatcaatttggaggccgtcttttcccaagttggtgcacttgacctgatatcatgacaaaaataacagttaaagaatgatttataaacaattac |
110 |
Q |
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| T |
31649947 |
catcatcaatcaatttggaggccgtcttttcccaagttggtgcacttgaccttatatgatgacaaaaataacagttaaagaatgatttataaacaattac |
31649848 |
T |
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| Q |
111 |
tcataaattatttaatcaaattgacgaaaatatttataaaatattaatagatccatatatttttccatcgagtatgtaatgatgatcatatatatgtctg |
210 |
Q |
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| T |
31649847 |
tcataaattatttaatcaaattgacgaaaatatttataaaatattaatagatccatataattttccattgagtatgtaatgatgagcatatatatgtctg |
31649748 |
T |
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| Q |
211 |
gaggcctagctgtgcatcacacattttttatttcgttaagttgtcttttaagggtacagacatagtatat |
280 |
Q |
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| T |
31649747 |
gaggcctagctgtgcatcacacattttttatttcgttaagttgtattttaagggtacagacatagtatat |
31649678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 88
Target Start/End: Complemental strand, 31656858 - 31656781
Alignment:
| Q |
11 |
catcatcaatcaatttggaggccgtcttttcccaagttggtgcacttgacctgatatcatgacaaaaataacagttaa |
88 |
Q |
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| T |
31656858 |
catcatcgatcaatattgatgccgtcttttcccaagttggtgcacttgaccttatatgatgacaaaaatatcagttaa |
31656781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 225
Target Start/End: Complemental strand, 31656715 - 31656646
Alignment:
| Q |
153 |
attaatagatccatatatttttccatcgagtatgtaatgatgatcatatatatgtctggaggcctagctgtgc |
225 |
Q |
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| T |
31656715 |
attaatagatctata-attattccatttagtatgtagtgatgatcatatat--gtctggaggtctagctgtgc |
31656646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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