View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1999_high_55 (Length: 252)
Name: NF1999_high_55
Description: NF1999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1999_high_55 |
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Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 46296445 - 46296206
Alignment:
| Q |
1 |
gtaagattttttactgctcgtaagttttaggccttagttcaattccatcaacaattagcccacctttcaagtgcacacctttgacttctttgagacacat |
100 |
Q |
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| T |
46296445 |
gtaagattttttactgctcgtaagttttaggccttagttcaattccatcaacaattagcccacctttcaagtgcacacctttgacttctttgagacacat |
46296346 |
T |
|
| Q |
101 |
tctcacttcttgaacttgaactttttcagtgtagaaactccctaatttaatctccaaccattcatcattgtgctcacaattgcaatgacaataagctttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46296345 |
tctcacttcttgaacttgaactttttcagtgtagaaactccctaatttaatctccaaccattcatcattgtgctcacaattgcaatgacaataagctttc |
46296246 |
T |
|
| Q |
201 |
ccatttcttttggagtgtgaacgaatgtagacatattctt |
240 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||| |
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| T |
46296245 |
ccatttcttttggattgtgaacgaatgtagacattttctt |
46296206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 21 - 185
Target Start/End: Complemental strand, 7983798 - 7983634
Alignment:
| Q |
21 |
taagttttaggccttagttcaattccatcaacaattagcccacctttcaagtgcacacctttgacttctttgagacacattctcacttcttgaacttgaa |
120 |
Q |
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|||||||| || ||||||||||||||||||||||||| | |||||| |||| |||||| |||||||| ||||||||||||||||| ||||||||||||| |
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| T |
7983798 |
taagttttgggtcttagttcaattccatcaacaattaatctacctttaaagtccacaccattgacttccttgagacacattctcacctcttgaacttgaa |
7983699 |
T |
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| Q |
121 |
ctttttcagtgtagaaactccctaatttaatctccaaccattcatcattgtgctcacaattgcaa |
185 |
Q |
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||||||||||||||||||||||||| | |||||||||||||||||| || ||||||||||||||| |
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| T |
7983698 |
ctttttcagtgtagaaactccctaactcaatctccaaccattcatctttatgctcacaattgcaa |
7983634 |
T |
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